Query= MSMg01no327_b19.b1 MSMg01no327_b19.b1 CHROMAT_FILE:
MSMg01no327_b19.b1 PHD_FILE: MSMg01no327_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:57 2005
(372 letters)
>mm_chr19_40903624_40904394
Length = 771
Score = 584 bits (302), Expect = e-171
Identities = 348/370 (94%), Gaps = 15/370 (4%)
Strand = Plus / Plus
Query: 4 gaattctctcccctgtcgccctccgatgttagtgtcttggctgccagagcgtggtggctt 63
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctctcccctg-cgtgctccgatgttagtgtcttggctgccagagcgtggtggctt 262
Query: 64 ccgactgttggaagtgcccgcagtcccaaaagccttccagagaatccgctcccaccctca 123
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 263 ccgactgccggaagtgcccgcagtcccaaaagccttccagagaatcagctcccaccctca 322
Query: 124 tctcttgcaacccaactcgaggttccgttctctgttgtgcgggtgccttgcccggttcac 183
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 323 tctcttgcaacccaactcgaggttccattctctgttgtgcgggtgccttgcccggttcgc 382
Query: 184 tctgaaacctttgctagtgtcttttgaagtttggattatctttactgaagtggaaaactg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctgaaacctttgctagtgtcttttgaagtttggattatctttactgaagtggaaaactg 442
Query: 244 ccctctactttccttccaaaagtgttttctcctgggatacc-tgtcgtgtttactgtccc 302
||||||||||||||||||||| ||| | ||| ||||||||||||||||||
Sbjct: 443 ccctctactttccttccaaaa-----------tgg-a-accctgtcgtgtttactgtccc 489
Query: 303 ctctgctggcatgcccatccaccatctagatagccagtcgcttcccctcaggcctttgca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctctgctggcatgcccatccaccatctagatagccagtcgcttcccctcaggcctttgca 549
Query: 363 tggcttccct 372
||||||||||
Sbjct: 550 tggcttccct 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 771
Length adjustment: 9
Effective length of query: 363
Effective length of database: 762
Effective search space: 276606
Effective search space used: 276606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no327_b19.g1 MSMg01no327_b19.g1 CHROMAT_FILE:
MSMg01no327_b19.g1 PHD_FILE: MSMg01no327_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:57 2005
(344 letters)
>mm_chr19_41081690_41082433
Length = 744
Score = 627 bits (324), Expect = 0.0
Identities = 339/344 (98%)
Strand = Plus / Minus
Query: 1 caggacagcagcatgaagagattcaatggtccaggccctttgccggcttagttgaaagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 caggacagcagcatgaagagattcaatggtccaggccctttgccggcttagttgaaagcc 485
Query: 61 tgtgtgatcttcaagggcgccaagttgagcttttgtgctgctattggtcctgtttcatcc 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgtgttatcttcaagggcgccaagttgagcttttgtgctgctattggtcctgtttcatcc 425
Query: 121 ttccagttgacacagaaagcaggcaagaggaaggaaagccttcccgagatgcccagcgag 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttccagttgacacagaaagtaggcaagaggaaggaaagccttcccgagatgcccagcgag 365
Query: 181 ctcagaaagaagggggagggggaagcatggcctccagtgctgtacttggtcctgccctgg 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 364 ctcagaaagaagggggagggggaagcgtggcctccagtgctgtacttggtcctgccctgg 305
Query: 241 ggatgccagctgtccccctggctcacacagcatcctctctggggagctgacccattttct 300
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggacgacagctgtccccctggctcacacagcatcctctctggggagctgacccattttct 245
Query: 301 ctggcctccccactggctcatggtgcagtttctagctgtctctg 344
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctggcctccccactggctcatggtgcagtttctagctgtctctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
