BAC Information

Click to search

BAC

Clone NameMSMg01-327F10
Chromosome19 (Build37)
Map Location 24,068,698 - 24,068,959
singlet/doubletsinglet
Overlap geneGm967
Upstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1
Downstream gene1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327F10.T7 (MSMg01no327_f10.b1)MSMg01-327F10.TJ (MSMg01no327_f10.g1)
ACCAG444724AG444725
length800790
length of high quality
(start - end)
264 (46 - 309)252 (72 - 323)
definitionCHROMAT_FILE: MSMg01no327_f10.b1 PHD_FILE: MSMg01no327_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:13 2005CHROMAT_FILE: MSMg01no327_f10.g1 PHD_FILE: MSMg01no327_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCACTATGTATACCCGGCTGGCCTTGAACTCACAGGGATCATCTGCCT
GCCTCCACCTCCTGAGTGCTGAGATAAAAGGTGTATGCCACCATGCTGGC
TCTATAGAACCTGCTTTAAGTTAGAAATTCTGTAAATGTACAGCCTCTTG
TCCACCAGTGTGAGATCCAAAAAGCTCTGATTACAGCTTCCTGCCCCAGG
CGCCACTGCCATGCTACATAATGGATGATCAATGTATTAAATTTCTCTTC
CAAAATCAGAAAAGCTCCAAATGCTATTTCTCACCTGGCCCCCAAAGCCT
TCAGATAATGGATCTTTGACCTGACTTCTGGTGACCTGTATTCTTTGTTC
TTTATAAGCAGGTAGTTCTTACAACCAACCATGGAGACCTGACCCATCCA
TCCCTTATTCAGGTATCTGCTCTGTTCTGTTCTGGTGCCGGTACGTTATT
GTCCACTTTGTATTCTGTCCCTTTGACTGTTATCTTTTGAATATATCTCA
TCTTTCCCTTTGCTTACTTCCCTCACTTTTTTTTAAAGTTATGTTTCATT
CATCATAGTTCACGTTCAATTTTACCATTATTTCATTTTGGTTACTTCTT
TTATACATAACTGTTCCTCCTCTTTTATATTCTTATTACGTCCTACCCGC
TCATCCTCACTTTACCTATTCTCTATTTATATATATATCCATCTTCAATT
ATATTATTTCTTCTCTTCTCCACTTATTAATATTTCTTTCTTTCCTATAG

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAGGTTGGCCTGCCTCTGCCTCCTGAGT
GTTGGGATTAAAGGCATGAGCCACCACAGCCTGGCTGATATATCAATATT
TTTCTGTTTTAAAGATGTATTTATTTTATGTCTATGAGTGCTCTATTTGC
ATGCCAGAAGAAGGCATCAGATCCCAGTACAGATGGTTTTGAGCCACCAC
ATGGCTGCTGGGAATTGAACTCACCCTCTGGAAGAGGAGCCAGTGCTCTT
AACTGGTGAGCCATCTCTCCGTTTTTAAACAACATTTTTAAGAGCTGTTT
TCTTCCAGAGACTCTGTGCCTCCACTACTTTATGAGGTCCTATATACTCT
GAGATGAGTATGTTTCCAAACAACCCCCCACCNAGATTANATATATATCT
GGCTTACGCCATTCCTTTATTTATAAAATTATTGTCTGTCCAGTGCGTTT
TCCTCTTGTCTTTCTCCGTTTTGTTATCATTAGTTGTTATCTCCCTTCCT
ATTTGCATTGCTACTCATCTACACGTTTCCTTTCCCTTGTTTTTATCACG
TTTATTTGTTTCTTCCTTCTTTACCTTTCTATCTTCTTCCTCAATCATTT
CTTACTTTTAATTATTTCCAATCCTTTATCCTCTTATATATTTCTATATT
ATATACTTATTTTTAAATACTTATTAACTTCATCATTATTACTCACATTC
TATTATCCATTTCCCTCTCGTTCTCTCTCTCTTGCCACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_f10.b1 MSMg01no327_f10.b1 CHROMAT_FILE:
MSMg01no327_f10.b1 PHD_FILE: MSMg01no327_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:13 2005
         (264 letters)



>mm_chr19_24068496_24069159
          Length = 664

 Score =  468 bits (242), Expect = e-136
 Identities = 257/262 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcactatgtatacccggctggccttgaactcacagggatcatctgcctgcctcca 62
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcactatgtagaccaggctggccttgaactcacagggatcatctgcctgcctcca 262

                                                                       
Query: 63  cctcctgagtgctgagataaaaggtgtatgccaccatgctggctctatagaacctgcttt 122
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 263 cctcctgagtgctgagataaaaggtgtatgccaccatgctggctctatagaacctgtttt 322

                                                                       
Query: 123 aagttagaaattctgtaaatgtacagcctcttgtccaccagtgtgagatccaaaaagctc 182
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagtcagaaattctgtaaatgtgcagcctcttgtccaccagtgtgagatccaaaaagctc 382

                                                                       
Query: 183 tgattacagcttcctgccccaggcgccactgccatgctacataatggatgatcaatgtat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgattacagcttcctgccccaggcgccactgccatgctacataatggatgatcaatgtat 442

                                 
Query: 243 taaatttctcttccaaaatcag 264
           ||||||||||||||||||||||
Sbjct: 443 taaatttctcttccaaaatcag 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)