Query= MSMg01no327_j04.b1 MSMg01no327_j04.b1 CHROMAT_FILE:
MSMg01no327_j04.b1 PHD_FILE: MSMg01no327_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:30 2005
(229 letters)
>mm_chr19_38175875_38176503
Length = 629
Score = 398 bits (206), Expect = e-115
Identities = 223/230 (96%), Gaps = 6/230 (2%)
Strand = Plus / Plus
Query: 3 gaattcatgagtcttata--cctctgagatttgatcactgtacccttccctgttataaca 60
|||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcatgagtcttagaggcct--gagatttgatcactgtacccttccctgttataaca 260
Query: 61 caaggtcagtacgttatgttgtctctccattgagtgtggattgtctgagttgatgagctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaggtcagtacgttatgttgtctctccattgagtgtggattgtctgagttgatgagctc 320
Query: 121 agtcaacttgcctttgttaacacatattagagaataccctttgcaagtctgtgttggtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcaacttgcctttgttaacacatattagagaataccctttgcaagtctgtgttggtac 380
Query: 181 attcccgaagtcccaacagtctggagctgaggc-ggtggatcaggaagtc 229
||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 381 attcccgaagtcccaacagtctggagctgaggcagg-ggatcaggaagtc 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space: 136400
Effective search space used: 136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no327_j04.g1 MSMg01no327_j04.g1 CHROMAT_FILE:
MSMg01no327_j04.g1 PHD_FILE: MSMg01no327_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:30 2005
(247 letters)
>mm_chr19_38359656_38360302
Length = 647
Score = 435 bits (225), Expect = e-126
Identities = 234/237 (98%)
Strand = Plus / Minus
Query: 11 tgaatgaatgaatgaatgaatgaatgaatgaatgatgaagataataaagctgcaattcag 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgaatgaatgaatgaatgaatgaatgaatgaatgatgaagataataaagctgcaattcag 323
Query: 71 caatggaatcgatgtttttatagttctataaggaaccagttctgtaatcatatctcccct 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caatggaatcgatgtttttatagttctataaggaaccagttctgtaatcatatctcccct 263
Query: 131 tcaagattctgtctctgagctggaccaggttgtacaggtctggaatcccagcttctaggg 190
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 262 tcaagattctgtctctgagctggaccaggttgtgcaggtctggaatcccagtttctagga 203
Query: 191 tatttgaggcaagaggatcataaaatcaagacatgtatagtctatagagcaagttca 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tatttgaggcaagaggatcataaaatcaagacatgtatagtctatagagcaagttca 146
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
