Query= MSMg01no329_a20.b1 MSMg01no329_a20.b1 CHROMAT_FILE:
MSMg01no329_a20.b1 PHD_FILE: MSMg01no329_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:22 2005
(270 letters)
>mm_chr19_43485553_43486223
Length = 671
Score = 485 bits (251), Expect = e-142
Identities = 263/267 (98%), Gaps = 2/267 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaacctgtccgctcttagagcatgcatttttaagctttcaaacaaatctcacca 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gaattcaaacctgtcagctcttagagcatgcatttttaagctttcaaacaaatctcacca 520
Query: 65 tgtagttttttggtaagatacctgtccttttttttttttttaaataaaagtcttgtgatt 124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 519 tgtagttttttggtaagatacctgt-cttttttttttttttaaataaaagtcttgtgatt 461
Query: 125 tttttttt-ccttaaagacaagatctggctgtgtggcctgtattaaccttttgtcctcct 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttttttttcccttaaagacaagatctggctgtgtggcctgtattaaccttttgtcctcct 401
Query: 184 acctttgctccccaattttatttacaagtgtgtcaccattcctggcaattctttacggtt 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 400 acctttgctccccaattttatttacaagtgtgtcaccattcctggcaattctttacagtt 341
Query: 244 ctttctgagataggatctccctctgta 270
|||||||||||||||||||||||||||
Sbjct: 340 ctttctgagataggatctccctctgta 314
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 671
Length adjustment: 9
Effective length of query: 261
Effective length of database: 662
Effective search space: 172782
Effective search space used: 172782
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no329_a20.g1 MSMg01no329_a20.g1 CHROMAT_FILE:
MSMg01no329_a20.g1 PHD_FILE: MSMg01no329_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:22 2005
(662 letters)
>mm_chr19_43330860_43331921
Length = 1062
Score = 1162 bits (601), Expect = 0.0
Identities = 646/663 (97%), Gaps = 6/663 (0%)
Strand = Plus / Plus
Query: 1 cagaaaactaaagacaaagcaacactttcaggcttttccccttaaggaaaatactgggag 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaaactaaagacaaagcaacgctttcaggcttttccccttaaggaaaatactgggag 260
Query: 61 aaaactaaaatgcaaagaaactctttgcctatattttccccctttcactctcacacacat 120
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 261 aaaactaaaatgcaaagaaactcttcgcctatattttccacctttcactctcacacacat 320
Query: 121 acacacacacacacacacacacacacacacacacacacataaacatgcacatatgaatac 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ----acatacacacacacacacacacacacacacacacataaacatgcacatatgaatac 376
Query: 181 acagacacacagacacacttgcacacccacatgcatacctatgcagatacacacccacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acagacacacagacacacttgcacacccacatgcatacctatgcagatacacacccacaa 436
Query: 241 acaaacccacagactcacacgtgtacacacacagagtctcccatgcacagactcacagac 300
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acaaacccacagactcccacatgtacacacacagagtctcccatgcacagactcacagac 496
Query: 301 atacataggcacacactcatgtgcgcacacacgcaaaaactaaaagggggaaatgcagag 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 497 atacataggcacacactcatgtgcgcacacacgcataaactaaaagggggaaatgcagag 556
Query: 361 aaaatctcttgtgtactgtatggatgtaacacctgtcaatcaaaactgattagctgtagc 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 557 aaaatctcttgtgtactgtatggatgtaacatctgtcaatcaaaactgattagctgtagc 616
Query: 421 agaggcagaaaatagaaggtgggacacctgataaggatcctgggataaagctaggtataa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agaggcagaaaatagaaggtgggacacctgataaggatcctgggataaagctaggtataa 676
Query: 481 gagatttgggcccccaggaactggaaggggaacaggcgtataacctgagcagaactcaga 540
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 677 gagatttgggcccccaggaactggaaggggaacaggcgtggaacctgagcagaactcaga 736
Query: 541 tcagaataaacaagttctgaatttatgagctagtcaaaaaagga-gccatggctatttgg 599
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 737 tcagaataaacaagttctgaatttatgagctagtcaaaaa-ggaagccatggctatttgg 795
Query: 600 ccaagttatgggtaaattcaatttgagtatcagagccgttattccaggagcttggggcca 659
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 796 ccaagttatgggtaaattcaatttgagtatcagagccattattccaggagcttggggcca 855
Query: 660 aga 662
|||
Sbjct: 856 aga 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
