Query= MSMg01no329_m22.b1 MSMg01no329_m22.b1 CHROMAT_FILE:
MSMg01no329_m22.b1 PHD_FILE: MSMg01no329_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:23 2005
(297 letters)
>mm_chr19_58254525_58255221
Length = 697
Score = 543 bits (281), Expect = e-159
Identities = 290/293 (98%)
Strand = Plus / Plus
Query: 5 gaattccaccaggacctcccaccttgtcatccctatttatcagcctttaataaaaggcat 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaccaggaccttccaccttgtcatccctatttatcagcctttaataaaaggcat 264
Query: 65 ctccctctccctggtggctggagtagcaatattatatatctgtggtttgggatctgacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctccctctccctggtggctggagtagcaatattatatatctgtggtttgggatctgacag 324
Query: 125 gaaattagtaatttactcaaggaggttgggcaggtgggaggagagagaacagagttccca 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 gaaattagtaatttactcaaggaggttgggcaggtgggaggagagagaacagagtttcca 384
Query: 185 tgtagaacctgtgagcatcttcaaaagtgttttttgagagtacctttatttctagaaaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtagaacctgtgagcatcttcaaaagtgttttttgagagtacctttatttctagaaaca 444
Query: 245 gccaggaaaaaaaacccagtatttgaaaatgaagcttttatttcttgtgttga 297
||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 gccaggaaaaaaaacccagtatttgaagatgaagcttttatttcttgtgttga 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_m22.g1 MSMg01no329_m22.g1 CHROMAT_FILE:
MSMg01no329_m22.g1 PHD_FILE: MSMg01no329_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:24 2005
(342 letters)
>mm_chr19_58426861_58427602
Length = 742
Score = 603 bits (312), Expect = e-177
Identities = 331/342 (96%), Gaps = 9/342 (2%)
Strand = Plus / Minus
Query: 1 agggaaaggacgcgttggaagatccacagaattagctcattttgttcatagaatttactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agggaaaggacgcgttggaagatccacagaattagctcattttgttcatagaatttactt 374
Query: 61 agcactcctttctgaaatagagatgtagccaaatctaaagagctgccttggctgcggggt 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 373 agcactcctttctgaaatagagatgtagccgaatctaaagagctgccttggctgcggggt 314
Query: 121 aaaattatgtggatctaaaccatactgaaatcatacttgagcttgcagttttcttttgag 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaaattatgtagatctaaaccatactgaaatcatacttgagcttgcagttttcttttgag 254
Query: 181 aagcctaatttgtcaaaaagatcaggactggcaaatctggccactgacgaatgtgtttgt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aagcctaatttgtcaaaaagatcaggactggcaaatctggccactgacgaatg------- 201
Query: 241 ttgtttgtttgtttgtttgttttacactgga-ggggggggcaaacttcttcagtgccaac 299
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 200 -tgtttgtttgtttgtttgttttacactggagggggggggcaaacttcttcagtgccaac 142
Query: 300 taagcaggtgcatggcagaaagctgtctgaagcttggaaggg 341
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 taagcaggtgcatggcagaaagctgtctgaagcttggaaggg 100
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
