BAC Information

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BAC

Clone NameMSMg01-329P04
Chromosome19 (Build37)
Map Location 11,074,891 - 11,215,553
singlet/doubletdoublet
Overlap gene5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik
Upstream geneRab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik
Downstream geneMs4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329P04.T7 (MSMg01no329_p04.b1)MSMg01-329P04.TJ (MSMg01no329_p04.g1)
ACCAG446632AG446633
length868879
length of high quality
(start - end)		187 (104 - 290)191 (75 - 265)
definitionCHROMAT_FILE: MSMg01no329_p04.b1 PHD_FILE: MSMg01no329_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:34 2005CHROMAT_FILE: MSMg01no329_p04.g1 PHD_FILE: MSMg01no329_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,215,370 - 11,215,553)(11,074,891 - 11,075,081)
sequence
CTTATATCCTCCAACTCCTCACTTTTTCTTTCCCCCTTTCTTTCTCCTTC
TTCCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTTAAGTAATCTCTGTCTGTAATTAATGTGATAAAAA
TTAAGATGAGAGGAGACAATATCAGATAAAATTTTTCCTTAGATTTCACA
CTTTCCCTTGCCTCAGTGGCTGCCTCTGCATTTGTACAGCAAATTTCATT
TCCTTTGAAGAACATGTGGATGGCATGTGCTGCTCCAGAGGAATGAGGTT
ACTTATAGCTAGCTCACTATTTGCCTTTCCATAAATTCTCCTTACCTGAC
GCATTGATTTAGGGCGTTGAAATTCATGTACCATGTTCATGTTCACACAT
TTTATTTACCTACCGCTGTATACTATAGAGACGGTTCAGTGATTACTATC
ATTTGTTTCTCTTCCCGAGGCCCCCCCCCCCCACCTTTTTATTCCACATA
GTGCCCCCACACTTACTTCTAATCTTTCGTCCCCTTTCTTCCCTTTTTTT
TCCCTCCACTTTCCCGTCCTTCCCTGCTTCCCTTTTGCCTTCCTTTTTCC
TTTTTCTTCCATCTTCCCCTCTTTTTCTTTTATATCATTCACTTTTCTTT
TTTCTTTCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTCCCTTATTGCCCC
ACATCATTCCCTTTTTCCCTCCCCTTTTATTCCCTTTTCCCCCTTTCCCC
CCTTTTATTTTCTTTTTTTTTCCCCCACCCCCTTTTTTTCCTTTCCTTCT
CTTTCCTCTCAATTTATCCTTCCCCCCTTTCTTTCCCCCTTATTTTGTCT
ATGTTTCTCTTCGTTTTG

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGAGGGCGAAGGGGAGGATACTAC
CAGCAGCTGCCTTCATAGAACTCTATAGGCAGAGAGGAAATGGGAGCATT
TGAGTCTTCAGGGTTGACTGGATGACAGTCCACACATGTAGCCGTTCTAA
AGCAACTGCCACGTGCCTCATCTGGAAGACTAGAGAGACGGCTTCTGTGT
GTGGTGTATTGGTGTTGATGCTGATGTATCTTTTGCCACATCCATCACCT
ACACCACCCCACCGTCTTACTCTTTTTTTTCATTCATCGTTAAATCTTAA
TCAACATACTCATTCCTTCTTCTTCCCCTTTCTCCCTTCCCCCCTTTTTT
TTATACTAATTTTTTAGCATCGCGCGCGTTCCCCCCCTCCTTTATTACAT
ACCTATTCTTCCTTTCTTCCCGTTTTTCCTCATTTTTTTTACCCTTATTC
ATTTTTTCTACTCCCTTTTCCCCTACCTTCGCTTCTTTACCCCTTTTTCT
TCTCTTTTCCCACTTTTACCCCCTTTATTTCCCTTCCCCCCTTTTTATAC
CTATACCCTCATATTCTACTTTCCCTTTTTTTTACCTTCATTAATCCCTA
TATTAACCACGCCTCGCCCATTTCTCTTTTTTTTTTCCCTCCATTTATTT
TTTTCTCTCCGTCTTTGTTTTTTTTACCCTTCGCTTCAGTTTATATTTTC
GTCCCCCGGTTTTTCTCTTTTTGTTTACCCCTTCTTCTCTTCCTTATGTC
CGTTCATAATCCCTCCAGTCTCCCCATCTTTCCTATCTCCATCCATCCAT
CCACTTCACCTTTCCCTCTGCTACCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_p04.b1 MSMg01no329_p04.b1 CHROMAT_FILE:
MSMg01no329_p04.b1 PHD_FILE: MSMg01no329_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:34 2005
         (187 letters)



>mm_chr19_11215167_11215753
          Length = 587

 Score =  340 bits (176), Expect = 2e-98
 Identities = 182/184 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttaagtaatctctgtctgtaattaatgtgataaaaattaagatgagaggaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggaattccttaagtaatctctgtctgtaattaatgtgataaaaattaagatgagaggaga 328

                                                                       
Query: 64  caatatcagataaaatttttccttagatttcacactttcccttgcctcagtggctgcctc 123
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 327 caatatcagataaaaattttccttagatttcacactttcccttgcctcagcggctgcctc 268

                                                                       
Query: 124 tgcatttgtacagcaaatttcatttcctttgaagaacatgtggatggcatgtgctgctcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgcatttgtacagcaaatttcatttcctttgaagaacatgtggatggcatgtgctgctcc 208

               
Query: 184 agag 187
           ||||
Sbjct: 207 agag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no329_p04.g1 MSMg01no329_p04.g1 CHROMAT_FILE:
MSMg01no329_p04.g1 PHD_FILE: MSMg01no329_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:35 2005
         (191 letters)



>mm_chr19_11074691_11075281
          Length = 591

 Score =  369 bits (191), Expect = e-107
 Identities = 191/191 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggagggcgaaggggaggatactaccagcagctgccttcatagaactctataggcagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggagggcgaaggggaggatactaccagcagctgccttcatagaactctataggcagag 260

                                                                       
Query: 61  aggaaatgggagcatttgagtcttcagggttgactggatgacagtccacacatgtagccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaatgggagcatttgagtcttcagggttgactggatgacagtccacacatgtagccg 320

                                                                       
Query: 121 ttctaaagcaactgccacgtgcctcatctggaagactagagagacggcttctgtgtgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctaaagcaactgccacgtgcctcatctggaagactagagagacggcttctgtgtgtgg 380

                      
Query: 181 tgtattggtgt 191
           |||||||||||
Sbjct: 381 tgtattggtgt 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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