BAC Information

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BAC

Clone NameMSMg01-330M23
Chromosome19 (Build37)
Map Location 22,129,570 - 22,129,854
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneTrpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330M23.T7 (MSMg01no330_m23.b1)MSMg01-330M23.TJ (MSMg01no330_m23.g1)
ACCAG447266AG447267
length758797
length of high quality
(start - end)
233 (128 - 360)285 (128 - 412)
definitionCHROMAT_FILE: MSMg01no330_m23.b1 PHD_FILE: MSMg01no330_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:36 2005CHROMAT_FILE: MSMg01no330_m23.g1 PHD_FILE: MSMg01no330_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGA
ATTCCAGACGATTCCCAGAAATTAACCCAGTGCTCGTTCCCTTCTGGCAG
ATAAGTGCTCAGGTCCCTTTGACCCCTACTTATTAGCTCCATTCTGCAGA
ATTGGACTTCATCCTCTAAATTCTTTCTATTTATTGTTTTGAGGTGAGCT
CTTACTTTGTAGCCCAGGCTAGCTTCTTGCTCAAGATCGTCCCTCTTCAG
CCTCCCAAGTACTGTGATAGCAGTAGTTTCAACACCCAGCTTCTTTCTCG
GGCCTTGTTCAAACCAGACCTCTGTAATTCTTGATGAGGGTTCAAGTACT
TACTTAGGTATATTTTTTGTTCCGCCACACCTCCAGGGTGAAGACCTCTA
ATAGGGTAACAGATATGACCATAATATTAAAATTATTAGGGTAATAATAT
TAACAATAATAATATTATTGTTAATGCGATAACAGATTGTAATGGTACTG
TCAGTTTGACTTGGTGATGAGCCACATTAAGTTGCTACACATAAGATTGG
GCACTCTGGTCTGAAGTTAGACTGTGTCCTCTCTCCTTATTAAGCCCTCC
CCCCTCTCTATTTCCCTCCCTCAATCCTCCCACCTATGTCTCTTTCCCAC
CATCCTCTTTTTTTCTAATCCATTTATTCCCCCCTCTACCAAACTCTATT
ATAACTTATTCTTTTTCTGCCCCCTCACTTCTCATTTTTTCTCCAAACTC
TATATTAT
TTTTTTTANTCNCTNNTTNNNNTTCCTTTATTCTCTTTTTANNNNNNAAC
TCTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATAGAGCTTCCTTACTCCAGAT
ATAACTCCCTCTGATTTCATTGAAAAAGATCACATTTTCTGCTCTTCAAG
AGTGATGGACTCCAGTTAGCTAATGAGTTCTTTTATGAGTGGAATCTGGC
TCTATGTTTTGGAACAGCTATAATTCAAATAGGGTGAATTGAAACCCTTT
GTACAACTCAATGATTTTCAAAAACATCATAAGGACCGCCATGAAGGTCT
GAGGACCCTGCAATAAGCTACTGTGCCTTAATTTTACTTTTCCTTCAAAC
TTATAGTGTATAGTTGAGTTCNTTGCCCNNACAAAGCCCGAAAGAAAAGA
AAATAAACATATCAAACAAGAAATTGAAGAAAAAAAAAGAAAGAACAGAG
GCCAATTTACCTTCTTGGACACTCGCAGCCATTAGCTAACATGTTCAACT
GTCTATGCAAAAGAGTTTTAGACATAAGCACATAGAGTTGAGTCTGTCCC
ATACTGGAGTCCCCACTTATTCAGGCAAATAATTTTATCCTAATAAACTG
ATTGCTGGATGAACACTTTGTATTTCTACCTTTCCTCTCCATATATGTTA
CCTTCTTGCCATTAGCCTAAAGGACTCCAAGAAGACCTACCTCCCTGACT
CTCTAACCCCTGCCCTAACCTACACCCAACTTTATGAAAAGCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_m23.g1 MSMg01no330_m23.g1 CHROMAT_FILE:
MSMg01no330_m23.g1 PHD_FILE: MSMg01no330_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:36 2005
         (285 letters)



>mm_chr19_22129370_22130054
          Length = 685

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatagagcttccttactccagatataactccctctgatttcattgaaaaagatcacattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tatagagcttccttactccagatataactccctctgatttcattgaaaaagatcacattt 426

                                                                       
Query: 61  tctgctcttcaagagtgatggactccagttagctaatgagttcttttatgagtggaatct 120
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 425 cctgctcttcaagagtgatggactccagttagctaatgagttcttttatgactggaatct 366

                                                                       
Query: 121 ggctctatgttttggaacagctataattcaaatagggtgaattgaaaccctttgtacaac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 365 ggctctatgttttggaacagctataattcaaatagggtgaattgaaacccattgtacaac 306

                                                                       
Query: 181 tcaatgattttcaaaaacatcataaggaccgccatgaaggtctgaggaccctgcaataag 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 305 tcaatgattttcaaaaacatcataaggacctccatgaaggtctgaggaccctgcaataag 246

                                                        
Query: 241 ctactgtgccttaattttacttttccttcaaacttatagtgtata 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctactgtgccttaattttacttttccttcaaacttatagtgtata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)