Query= MSMg01no331_h01.b1 MSMg01no331_h01.b1 CHROMAT_FILE:
MSMg01no331_h01.b1 PHD_FILE: MSMg01no331_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:20 2005
(527 letters)
>mm_chr19_20444941_20445866
Length = 926
Score = 822 bits (425), Expect = 0.0
Identities = 498/523 (95%), Gaps = 3/523 (0%)
Strand = Plus / Plus
Query: 5 gaattctccacactgactttcatgagggttgggtcaatttcagttttacctacaatgaat 64
|||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 207 gaatgctccacactgactttcatgagggttgggccgatttcagttttacctacaatgaat 266
Query: 65 tatggttcccttttctgtgcatccacaccagcatttgatgtcatttttatcctatattac 124
|| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 267 tacagtccccttttctgtgcatccacaccagcatttgatgtcatttttatgctatattac 326
Query: 125 tttggccattattattcaagtcatagtaaatgtcaccgtcattttttattttgatttgtt 184
||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 327 tttggccattattattcaagtcatagtaaatgtcagcatca--ttttattttgatttgcc 384
Query: 185 tttatattttaaaaggaatatttatttgttttgtgaagataaactacattctttttatta 244
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 tttattttttacaaggaatatttatttgttttgtgaagataaactacattctttttatga 444
Query: 245 tagcagtgttaaaatgttcatagttatagcaaaatatgctactactgtgaggaaagtttt 304
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagcagtgttaaaatgctcataattatagcaaaatatgctactactgtgaggaaagtttt 504
Query: 305 tataaagtttagatgtcatgaatagagatcacatactttcaaagtagtcttaatatgtct 364
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 505 tataaagtttagatgtcatgaatagacatcacatgctttcaaagtagtcttaatatgtct 564
Query: 365 ttccactacaagttaatgttatcaaacatctttaaaaatattcaatagccatttcatttc 424
|||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 565 ttccactagaagttaatgttatcaaacatctt-aaaaatattcaaaagccatttcatttc 623
Query: 425 ttccttttaactctccattcagagctgcattctgggttgttttgttttgatttggtttag 484
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 624 ttccttttaactctccattcagagctgcgttctgggttgttttgttttgatttggtttag 683
Query: 485 tttaggctttgttgttgttgtttgtttgtttgtttgtttgttt 527
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 684 tttaggctttgttgttattgtttgtttgtttgtttgtttgttt 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 926
Length adjustment: 10
Effective length of query: 517
Effective length of database: 916
Effective search space: 473572
Effective search space used: 473572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_h01.g1 MSMg01no331_h01.g1 CHROMAT_FILE:
MSMg01no331_h01.g1 PHD_FILE: MSMg01no331_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:20 2005
(656 letters)
>mm_chr19_20612435_20613490
Length = 1056
Score = 1199 bits (620), Expect = 0.0
Identities = 647/656 (98%)
Strand = Plus / Minus
Query: 1 tcacagactgagagaaggctacgcaatattagatggtgaaagacaatgaaggtcaaatac 60
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 855 tcacagactgagagaaggctatgcaatattagatggtgaaagacagtgaaggtcaaatac 796
Query: 61 ttgaaacacctcatattcatctctaactgaatgattagctgttcatttaaacgtatggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttgaaacacctcatattcatctctaactgaatgattagctgttcatttaaacgtatggct 736
Query: 121 tgttgggttagggaacacccagtttacaaagaatagctaggtgcaaggtcagtgtgaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgttgggttagggaacacccagtttacaaagaatagctaggtgcaaggtcagtgtgaggg 676
Query: 181 tccaagtgggagaattcactctcaaataatgtcaaaaggaaaaaaaaaagaaagaatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tccaagtgggagaattcactctcaaataatgtcaaaaggaaaaaaaaaagaaagaatgat 616
Query: 241 atgccaaatctacatagatgtgtccccaaacactaatctcctgccaatagtaactcagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 atgccaaatctacatagatgtgtccccaaacactaatctcctgccaatagtaactcagca 556
Query: 301 gtttgtgggatgatctgttaccagtgtttacagtaggctcttgccatctttgaagggaac 360
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 555 gtttgtgggatgatctgttaccagtgtttacagtaggctcttgggatctttgaagggaac 496
Query: 361 tgttctagatctgcagagggaagagcagccttctcggcagcctgaatttgcagcggaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgttctagatctgcagagggaagagcagccttctcggcagcctgaatttgcagcggaaaa 436
Query: 421 ttctcctcctttagacttcacttgtcctagtttgtgtctctattgttgtgataaaacact 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttctcctcctttaaacttcacttgtcctagtttgtgtctctattgttgtgataaaacact 376
Query: 481 gacccataacaacttgagagaggtgaggatttatctggcttacaggttatagaccatccc 540
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 375 gacccataacaacttgagagaggtgaggatttatctggcttacaggttgtagaccatcac 316
Query: 541 catgagcacaaggctggaactgtacgcagatattgaaggagagaccacagaggaacagtt 600
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 315 cgtgagcacaaggctggaactgtacgcagatattgaagcagagaccacagaggaacagtt 256
Query: 601 gctttctggcttgctcccgctggcttgctcagcttgccttctcattgtacccagcc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gctttctggcttgctcccgctggcttgctcagcttgccttctcattgtacccagcc 200
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
