Query= MSMg01no331_o10.b1 MSMg01no331_o10.b1 CHROMAT_FILE:
MSMg01no331_o10.b1 PHD_FILE: MSMg01no331_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:53 2005
(674 letters)
>mm_chr19_49717930_49719003
Length = 1074
Score = 1197 bits (619), Expect = 0.0
Identities = 658/671 (98%)
Strand = Plus / Plus
Query: 4 ggaattcatcgtgacacagtgacaaagctgtcctttcatcccttaacttccacatgattg 63
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattgtgacacagtgacaaagctgtcctttcatcccttaacttccacatgattg 263
Query: 64 ctgcaaccataagtatgttagtattcaccaccacacatataccatatatgtacatatgaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgcaaccataagtatgttagtattcaccaccacacatataccatatatgtacatatgaa 323
Query: 124 aatggcaacgtctgacattcacgagaaacaaaaatcacagcatatgttaaatttaactca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 aatggcaacgtctgacattcacgagaaacaaaaatcacagcatatgttaaatttaacaca 383
Query: 184 acagatcatcagaaatgcatgttattcattcctccgttctgtgtaagcagaatctataca 243
||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 384 acagatcattagaaatgcatgttattcattcttctgttctgtgtaagcagaatctataca 443
Query: 244 gtttggaggtttttgtacaagttgtctaggaaattttctaattttgcaaattcaattgta 303
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 444 gtttggaggtttttgtacaagttgtctaggaaattttttaattcagcaaattcaattgta 503
Query: 304 aatatgtctctcagagcaatctatccgatccaagaagacatttcttgagaaatttagaga 363
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aacatgtctctcagagcaatctatccgatccaagaagacatttcttgagaaatttagaga 563
Query: 364 ttgtatcatgttgacatgtctatattggcactgtcatgcactatgtgatgaagaatgcac 423
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgtatcatgttgacatgtcaatattggcactgtcatgcactatgtgatgaagaatgcac 623
Query: 424 caaaacttcaagcaactagattccgtgtatccattctttgctttatttatgcatgtcttc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaaacttcaagcaactagattccgtgtatccattctttgctttatttatgcatgtcttc 683
Query: 484 caagaagagtacaggatgacatcttacaaactacaggaatttacaagtgcttcttgtcat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caagaagagtacaggatgacatcttacaaactacaggaatttacaagtgcttcttgtcat 743
Query: 544 aactgacaaatttaacattctgttggaaaattttccattttaggtaagtttataatgcat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aactgacaaatttaacattctgttggaaaattttccattttaggtaagtttataatgcat 803
Query: 604 aggtgactagaggttggttgtggtagacaataattctatgtgctttctttgggatgtaga 663
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 804 aggtgactagaggttggttgcggtagacaataattctatatgctttctttgggatgtaga 863
Query: 664 gtgagcgtgag 674
|||||| ||||
Sbjct: 864 gtgagcatgag 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_o10.g1 MSMg01no331_o10.g1 CHROMAT_FILE:
MSMg01no331_o10.g1 PHD_FILE: MSMg01no331_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:53 2005
(647 letters)
>mm_chr19_49874046_49875092
Length = 1047
Score = 754 bits (390), Expect = 0.0
Identities = 457/490 (93%), Gaps = 18/490 (3%)
Strand = Plus / Minus
Query: 159 acataaaaggaaaggtaggagaaaagacactcta-tatttacagtcacccctttcaaatg 217
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 1047 acataaaaggaaaggtaggagaaaggacactctattatttacagtcacccctttcaaatg 988
Query: 218 tagtatgagcaactgactcgtgcatttggcatcacaacctgcttctgcaatgatggcttt 277
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 tagtatgagtgactgactcgtgcatttggcatcacaacctgcttctgcaatgatggcttt 928
Query: 278 caagccacaacagactgccttcacagagtgggccaaaataaagttttcattcctccagtt 337
|| ||||||| ||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct: 927 catgccacaatagactgccttcacagggtgggccaaaataaggtcttcattcctccagtt 868
Query: 338 gttttgtctggcattttgctatatcaataaagaagtattcaacttccccaaagtgcattc 397
| ||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 867 gctttgtctggcatttt-----------------gtattcaacttccccaaagtgcgttc 825
Query: 398 tcagctcaaggtgatgattctgccatttgtcctttagttgggataaagaacaggccctga 457
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 824 tcagctcaaggtgatgattctgccatttgtcctttggttgagataaagaacaggccctga 765
Query: 458 cttcacatcagttctttcttctccattcttcttatttcctgcccagttgagcaagctgtg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cttcacatcagttctttcttctccattcttcttatttcctgcccagttgagcaagctgtg 705
Query: 518 aaagcacttcggtgtgtcagtctgtctgaggatgtgatctaagctctgaaaggccatggc 577
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 aaaccacttctgtgtgtcagtctgtctgaggatgtgatctaagctctgaaaggccatggc 645
Query: 578 aagtgaagcctagtcaacaaatcactgcaggcttaaaacaaaacaaaaccaaaccaggtt 637
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 644 aagtgaagcctagtcaacaaatcactccaggcttaaaacaaaacaaaaccaaaccaggtt 585
Query: 638 agttgagact 647
||||||||||
Sbjct: 584 agttgagact 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
