BAC Information

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BAC

Clone NameMSMg01-331P07
Chromosome19 (Build37)
Map Location 55,969,457 - 56,175,967
singlet/doubletdoublet
Overlap geneTcf7l2, LOC100043484
Upstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Ppnr
Downstream geneHabp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331P07.T7 (MSMg01no331_p07.b1)MSMg01-331P07.TJ (MSMg01no331_p07.g1)
ACCAG448118AG448119
length785769
length of high quality
(start - end)
154 (45 - 198)242 (75 - 316)
definitionCHROMAT_FILE: MSMg01no331_p07.b1 PHD_FILE: MSMg01no331_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:57 2005CHROMAT_FILE: MSMg01no331_p07.g1 PHD_FILE: MSMg01no331_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,969,457 - 55,969,606)(56,175,726 - 56,175,967)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTAACATACCAGTGTTTTTAATAACCTATTTTGGTTTTTTGTATT
CCCTCCCCCACAAAGAGTAGAATTCATTGAGTTAATTAAGATATGAATGT
TGTCAAGAATTTTATAGGATTCTTTCGGGTGGGGGGAAGCTTCGGAGTXX
XXXXXXXXXXXXXXXXXXXXTAAATTCAGCTAGCTTCCTCCCCGTCCTTT
TCTGAATAGCATCAGATAGCTATTAAAGCTTAATTTCACTGTAGATCTGC
AGAGCGTTACTTTCACCTACTTAGGTGAACTCGCTCGGATTATTGAAATT
GCTTTTATGCTTGTCTAGTCGGCTAACAAAATATCAGGCTTTGTTCTTTT
GATTGAATGTTGCCCCCCCCCCGAATTGTATAGCCCTTTTCCCTTGCTTT
TTTTTCATTGTTGTTTTTTTTCCCTTTCCTTCTTGTTCCTTTGTTCTTAA
CCTTCGTCTTTTCTCTTTCTTCCTTCGCCTTTCATCCCTATTTGTTCTCC
TTTCCTTTTCTTTCTTTTTTTTCTCCCTTTCCTCCCCTTTTTATTGTTTT
CCCCCTTTCTTTTTCCCTTCTTCCCGCCTTGTTTCTTCTTCGCTTTTTTT
CTCGCCTGCGTGAACCCCGTTGTGTATCTTCTCCCCTTTTCTTGTGGCCT
TTCTCTTCTTTCTCTTTTTCCCTTTTTTCTTTTCCTTTTTTCCATTCCCA
CCCCTTTTATTGTATTTGCCCGTTTCCCCCTTATG
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTAAGATGAAAGGGGAAAAAGACTT
GACATGCCAGAAAGATGTCATTCCTGTGACGGCCAAACTGACAACTCAGA
CAGACTCCGTGTATGGTTTGCAGTGTGGTTAGGATTCTGTGTTTCTAAAA
GGGACTGGTGCATGAAGGACTAACTCATGAGCCCAGGTTTTCGGGGAGAA
AAGACCGCAGGAGCACTGTAATAATAACAGTGGCCAACCTCCCAGAACCA
TGTGTGCATCTGCATGGTAGTTTTGCCCTCATTTCTCATACATTTTTTTT
TTTGCCACAATGAAGTTTTGAGTTGTGAAGCATTTACTTGATCACATTCT
CTTCTGTGCTCTGGCCCCCCCCCTTTTAAAATACACTGTTTGCCCTTATT
ACGCTTTCACCTCTTATCCTTATTCACCTCCTTTTTTTTCACCCTTGCCC
TTTTATTTTTTCTTCCTGACTTTCCCCTCTCCTCTTATTTCTTCTTTTTT
TTCTTCTCTTCTCCTTCATTTTTTCTTTATATCCCTCCTTTTTTTTTCCT
TTCCCTTTTTTCCTTTTCTTTCTTCCTTCGCCCATTTCCTTTTCCCCCTT
TCCTTTTTCCTCCTTTTCTTTTTCTTTTTTTCCTTCCCTCCTTTTTTCCC
TCCTTTTTTTTTCCTCTTTCATCTTTTTTTCTCTCTTTTTTTCCCCTTTT
TTTTTTCCCTTTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_p07.b1 MSMg01no331_p07.b1 CHROMAT_FILE:
MSMg01no331_p07.b1 PHD_FILE: MSMg01no331_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:57 2005
         (154 letters)



>mm_chr19_55969253_55969806
          Length = 554

 Score =  282 bits (146), Expect = 5e-81
 Identities = 149/150 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctaacataccagtgtttttaataacctattttggttttttgtattccctcccc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaacatacaagtgtttttaataacctattttggttttttgtattccctcccc 264

                                                                       
Query: 65  cacaaagagtagaattcattgagttaattaagatatgaatgttgtcaagaattttatagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacaaagagtagaattcattgagttaattaagatatgaatgttgtcaagaattttatagg 324

                                         
Query: 125 attctttcgggtggggggaagcttcggagt 154
           ||||||||||||||||||||||||||||||
Sbjct: 325 attctttcgggtggggggaagcttcggagt 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 554
Length adjustment: 8
Effective length of query: 146
Effective length of database: 546
Effective search space:    79716
Effective search space used:    79716
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no331_p07.g1 MSMg01no331_p07.g1 CHROMAT_FILE:
MSMg01no331_p07.g1 PHD_FILE: MSMg01no331_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:57 2005
         (242 letters)



>mm_chr19_56175526_56176167
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaagatgaaaggggaaaaagacttgacatgccagaaagatgtcattcctgtgacggcc 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actaagatgaaagggggaaaagacttgacatgccagaaagatgtcattcctgtgacggcc 383

                                                                       
Query: 61  aaactgacaactcagacagactccgtgtatggtttgcagtgtggttaggattctgtgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaactgacaactcagacagactccgtgtatggtttgcagtgtggttaggattctgtgttt 323

                                                                       
Query: 121 ctaaaagggactggtgcatgaaggactaactcatgagcccaggttttcggggagaaaaga 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 322 ctaaaagggactggtgcatgaaggactaactcacgagcccaggttttcggggagaaaaga 263

                                                                       
Query: 181 ccgcaggagcactgtaataataacagtggccaacctcccagaaccatgtgtgcatctgca 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 262 ccgcaggagcactgtaataataacagtggccaacctcccagaaccttgtgtgcatctgca 203

             
Query: 241 tg 242
           ||
Sbjct: 202 tg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)