BAC Information

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BAC

Clone NameMSMg01-332B07
Chromosome19 (Build37)
Map Location 46,728,016 - 46,728,679
singlet/doubletsinglet
Overlap geneD19Wsu162e
Upstream geneFbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2
Downstream geneCyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a, Obfc1, Slk, Col17a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332B07.T7 (MSMg01no332_b07.b1)MSMg01-332B07.TJ (MSMg01no332_b07.g1)
ACCAG448208AG448209
length1,6091,269
length of high quality
(start - end)
---664 (139 - 802)
definitionCHROMAT_FILE: MSMg01no332_b07.b1 PHD_FILE: MSMg01no332_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:10 2005CHROMAT_FILE: MSMg01no332_b07.g1 PHD_FILE: MSMg01no332_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCGCTTAGGGGGNNNCCATATTGGCGGGATAAGAATCTCTATATAGGG
AGAGGGAAACGCGCGGGAACTCTATAGGANANGANGNNGATTCCTAATCA
GGACTCCCCCTGNNNNNGNNNNNNNNGNGNGNGNNNNGNGNGCCCCCTTT
TAAAGTAGTCTCCANNNNGGNGAGGGNGGNGANAGGGAGNGAGAGTATGA
GTGAAGAGGTACTTGGGGTTGAGATGCATTATTAGAGAGATATGCAGNAA
TAGGGAGTGNGTGAAAGGAGAGAGTTTAGAAAGGAGTGAAGATTAAGATG
TGGAGAGATGGGNAGAGAGTGTGACAGGATAATGTGATGATGATTGAGAG
GAAGAATAGGTGTAGATGAGGGTATGTTGGATGTAGAGGAGAGTTGAGTA
TGGATTGTTTGATGTAGGAAGATGTAGAGGGAGAATGGTATAGATGGGTG
ATGGGGTGGAGAAGTAGAGTTAGAGTGGGAGGAGATTGGGAAACGGTGAG
GTGGGTAGGTGAGGTATGTAAAGAATAGATGTATTGTGTTTATGTAGGTA
AGAAAGGAATGTTGATTTGTAGAGGAGATTTATAGGTGATAGTAAGTGTG
GTCTTGAGTGATGAGAGAATTTATAGTGTGGTGATGTGAAAGAATGGATG
TTGGAGATGTGAGATGGGATTGGTAGAGAGTAAGAATGAGATGGGAGATA
TAAAAATGTGTGAATTTTANGGGTGTGGAATTGATAGTAGAATTTTGATG
GGGTTGAATTATGGTTGTAAGGTATTGTTAAGTAGTAAGGATTGGGATTT
GGTGATAAGATATTAGTAGGGATGTTGAGGGAAGATGTTGAAAGGGTATN
TAATGAAGGTGGAATAAGGGTTTATGTGTGGGAAATTGGAAAAGTGGGGA
AATAGTTTTTAATGTGAGGATGAATTAGGTGGAAAGTTTTTGATGTAAGT
GGAGGAAGATTTTTATGGGAAAAAAAAGGAGGATTTTTGGGTGTAAAAGG
GTTTATTGTANAAGGTAGTTTATAGAGGGGGAGGGTGGGGAAGAATAAAT
TAAAGGGGAAGAAAAGAAATTTGGTAGGAGGGGTTTTAAAAGAGGAGGGG
GAAAAAGGGGAATAAGTNTTGGGAAGGTATTAATTGTTTGAATGGTGAAA
GTTGAGAAAAAGAAAGGAAAGATGTTATTTGTTATTGTTTTTGGGTAATA
TAAGGAAAAGGAGAGGGTTTTATTATGATGGGAAGGAGAGAGGGGTGGTT
AGGTTTTATTATNTATAGGAGTGGAATGTTATATATGAGATATAAAAGGA
TGAATTGGTGTAATTTTATATTTGTAATTAATTTGGATGGGAGAGAGTAG
ATATAAAGTAAGATATATTAGAAGGGGTAGTAAATATATGATAATATATT
GGATGAGAATGAATTAGTGAATATTTTGATAGTTAGATAGATAATATAGT
TGTGTTTATAATATTATGTGATAATAGTGAGATTATTAGATAATTATAGT
GTGAAGATATATGTATTGTAAAGATGTATAGATGGTGTATTTGTATAGGG
GAGTGATGAAGGAGGATGTATTAAGTTGATGGTGTTGATGGTAGAAGCGG
TGACGTGGG
CCGCCCTCTTTTNAAACCAAGCGAGCCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCATAAGGCCCCCCCTCTCAG
GAGATCCAGGGATGCCCAACCTTTTATCTCCTCCCACGCCATTTGTCACA
TTGTACAGATTGTGATGTGACAAGTGTTTGCCCTTCCCTAGCTGGAAGGC
TTTGTAGTAAATGCTCAATAAACGTTAGCAGCTGCTGCACAGCTCTAAGC
GAGGTGATCCGCCCCAAGGTACTGAGCGCATGCAGTCAGGAGGGGTCTCA
CCTGGCATGTTTTCAGTGAACCTTGGTGTCACAGGCTCCTCACTCCTCCC
TGACTGGTGATCAAAGCTCACCACAACATGAGGAACTGTGTTGAGGGCTC
ACAGCATAAGGATTTTTGAGAACCGCTGCTCTAAGCTGTTGCAGTCCCCT
TACCTGCTCACAGCTAAGAAGCATAGCCACCATGGCTCTGGGGTGGGAGG
GGACAGTGTCACCTTTCATGAGCTTTGTTAGAGTGCTGACCCATGTGGTA
ATTTCTTCTCCCACCTCCCTGTTTTAGGGTTTTTGCCAAACTCTTTGCTA
CCTCCTTATGAGGAAGTGGTGAACCGACCTCCAACTCCTCCCCCACCGTA
CAGTGCCTTCCAGCTCCAGCAGCAGCAGCAGCTGCTGCCACCTCCTCCTC
AGGGTGGCCCTCCAGGTGGCAGTCCCCCAGGCGCTGACCCGCCGCCCCAG
GGCTCCCAGGGAGCGCAGAGCAGTCCTTTGTCCGGACCGAGCCGAAGCAG
CACAAGACCTCCCAGTGTCGCAGATCCTCAGTCCCCTGAAGTGCCCACTG
ACCGGGAAGCCACCAAAGCCTCTGGGACGGAATCTGGTAGCCCCATGGCC
GGCCTCGGGGAGCTGGACCCGGGCGCCTTCCTGGACCAGGATTTCCAAGT
GCAGGAGGATCTACTGAAAATTCCGGTTCTGAGCGGGCGGCGTGGCCCCT
GAAATGGAATACAGACCCCCGGCAGGCATCGCCCTTTCAAGGTGAATCAG
GCTTTGAGGTGTGGGGGTGCAACGGGGGCCCCCTTGAACATAACCCCAAG
AGATTACCCCCTCCTATAATAATCTCTGACACGGCCCCTTTAATTTCTTT
ACAATTTCTTGTCAACCCCCCTTTGTATAAAAAAAAGTCTCTCGCTCCTC
CCCCAAGTTTTCACCTGAAATATTTAAAACCCCTCTTTCATACATCATGT
TTGTTTTGTTAACAACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_b07.g1 MSMg01no332_b07.g1 CHROMAT_FILE:
MSMg01no332_b07.g1 PHD_FILE: MSMg01no332_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:10 2005
         (664 letters)



>mm_chr19_46727816_46728879
          Length = 1064

 Score = 1199 bits (620), Expect = 0.0
 Identities = 653/664 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatttgtcacattgtacagattgtgatgtgacaagtgtttgcccttccctagctggaag 60
           |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 ccatctgtcacattgtacagattgtgatgtgacaagcgtttgcccttccctagctggaag 260

                                                                       
Query: 61  gctttgtagtaaatgctcaataaacgttagcagctgctgcacagctctaagcgaggtgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttgtagtaaatgctcaataaacgttagcagctgctgcacagctctaagcgaggtgat 320

                                                                       
Query: 121 ccgccccaaggtactgagcgcatgcagtcaggaggggtctcacctggcatgttttcagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgccccaaggtactgagcgcatgcagtcaggaggggtctcacctggcatgttttcagtg 380

                                                                       
Query: 181 aaccttggtgtcacaggctcctcactcctccctgactggtgatcaaagctcaccacaaca 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 381 aaccttggtgtcacaggctcctcactcctccttgactggtgatcaaagctcaccacagca 440

                                                                       
Query: 241 tgaggaactgtgttgagggctcacagcataaggatttttgagaaccgctgctctaagctg 300
           ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 441 tgaggaactgtgttgagggctcacagcataaggaaggttgagaaccgctgctctaagctg 500

                                                                       
Query: 301 ttgcagtccccttacctgctcacagctaagaagcatagccaccatggctctggggtggga 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcagtccccttacctgcccacagctaagaagcatagccaccatggctctggggtggga 560

                                                                       
Query: 361 ggggacagtgtcacctttcatgagctttgttagagtgctgacccatgtggtaatttcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggggacagtgtcacctttcatgagctttgttagagtgctgacccatgtggtaatttcttc 620

                                                                       
Query: 421 tcccacctccctgttttagggtttttgccaaactctttgctacctccttatgaggaagtg 480
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcccacctgcctgttttagggtttttgccaaactctttgctacctccttatgaggaagtg 680

                                                                       
Query: 481 gtgaaccgacctccaactcctcccccaccgtacagtgccttccagctccagcagcagcag 540
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 gtgaaccgacctccaactcctcccccaccgtacagtgccttccagctccaacagcagcag 740

                                                                       
Query: 541 cagctgctgccacctcctcctcagggtggccctccaggtggcagtcccccaggcgctgac 600
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 cagctgctgccacctcctcctcagggtggccctccaggtggcagccccccaggcgctgac 800

                                                                       
Query: 601 ccgccgccccagggctcccagggagcgcagagcagtcctttgtccggaccgagccgaagc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccgccgccccagggctcccagggagcgcagagcagtcctttgtccggaccgagccgaagc 860

               
Query: 661 agca 664
           ||||
Sbjct: 861 agca 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)