Query= MSMg01no332_g19.b1 MSMg01no332_g19.b1 CHROMAT_FILE:
MSMg01no332_g19.b1 PHD_FILE: MSMg01no332_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:51 2005
(563 letters)
>mm_chr19_16344308_16345270
Length = 963
Score = 1004 bits (519), Expect = 0.0
Identities = 546/555 (98%), Gaps = 1/555 (0%)
Strand = Plus / Minus
Query: 10 tgacatgttcctatggctctagctgtgcctttgcttaaggcacatgaatagtcacttctt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 tgacatgttcctatggctctagctgtgcctttgcttaaggcacatgaatagtcacttctt 904
Query: 70 actatggtaggc-aaaaaatggttcatcaaagatatccaagttcacagtgcctgtgaaag 128
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 903 actatggtaggcaaaaaaatggctcatcaaagatatccaagttcacagtgcctgtgaaag 844
Query: 129 tgttgtttatatggcaaggaaaattaggttttaaagctgggagatgatcctaggtcagct 188
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 843 tgttgtttatatggcaaggaaaattaggttttaaaactgggagatgatcctaggtcagct 784
Query: 189 gggtggccctaaagtaaccatggaggttgttagcggaaaagcgaggcagatgagactgga 248
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 783 gggtggccctaaagtaaccatggaggttgttagcggaaaagcgaggcagacgagactgga 724
Query: 249 gtggtacggtgtgagggcctgacccttgaccccctactgccacctgtgaacatgaaggaa 308
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 723 gtggtacggtgtgagggcctgacccttgaccccctactgccacctgtgaacatggaggaa 664
Query: 309 ggaaccaaaatttggggtataaacctgattttcctgcacagcctgaagaggaatgcagtc 368
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggaatcaaaacttagggtataaacctgattttcctgcacagcctgaagaggaatgcagtc 604
Query: 369 ctgttgaacctgtagacgggccagtctgactcagttcagacttgtgactaccagaggtcc 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctgttgaacctgtagacgggccagtctgactcagttcagacttgtgactaccagaggtcc 544
Query: 429 tgtgtttgtggttactccattcatagcagcaagagattaaatcttttccagctctactgc 488
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 543 tgtgtttgtggttactccattcatagcagcaagagattacatcttttccagctctactgc 484
Query: 489 tggtcccctcggaagaagagggaaacaacagaatctgttgctaccacctggccaaagcat 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tggtcccctcggaagaagagggaaacaacagaatctgttgctaccacctggccaaagcat 424
Query: 549 cttgctggttcccct 563
|||||||||||||||
Sbjct: 423 cttgctggttcccct 409
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_g19.g1 MSMg01no332_g19.g1 CHROMAT_FILE:
MSMg01no332_g19.g1 PHD_FILE: MSMg01no332_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:51 2005
(706 letters)
>mm_chr19_16162338_16163443
Length = 1106
Score = 1295 bits (670), Expect = 0.0
Identities = 697/706 (98%)
Strand = Plus / Plus
Query: 1 aggaattcaaacagtacaggggtatgactttccctgctctggaagacttgagtggctgga 60
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 201 aggaattcaaacagtacaggggtatggctttccctgctctggaagactggagtggctgga 260
Query: 61 cctgggatcaactgcaggctgctttaacaatctgtttgggagctgggttaggtgactaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgggatcaactgcaggctgctttaacaatctgtttgggagctgggttaggtgactaga 320
Query: 121 ttcagtggggctgtatgttctttcaagttttgtagactttctcaccaaatggtaattggg 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagtggggctgtaggttctttcaagttttgtagactttctcaccaaatggtaattggg 380
Query: 181 tttttgtttttttcataccgtttcaaagcttcaacagtgagtatttcaatcaagatgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttgtttttttcataccgtttcaaagcttcaacagtgagtatttcaatcaagatgaaa 440
Query: 241 tacagagagatgctacatgaacttatacagctgtgatagctattcttgtttgtcaactac 300
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 441 tacagagagatgctacatgaacttatacagctgtgatggctattcttggttgtcaactac 500
Query: 301 atctggtattagctaaaatccaaaaatggagggcgcacctttaaaggatattttgcttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctggtattagctaaaatccaaaaatggagggcgcacctttaaaggatattttgcttaa 560
Query: 361 tttaaagtagaaagagctacttctaatccagacctttttgggtaggaagacacatacttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 tttaaagtagaaagagctacttctaatccagacctttttgggtaggaagacacgtacttt 620
Query: 421 taatctggatcttgagacaggaagacacacgtttaaccagggctacaccttctgctggaa 480
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 621 taatctggatcttgagacaggaagacacacgtttaaccagggccacgccttctgctggaa 680
Query: 481 gcctatataaggacatggaaaaaggaaatgttacctctttgcctgcttgccctctccttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcctatataaggacatggaaaaaggaaatgttacctctttgcctgcttgccctctccttg 740
Query: 541 agagcacatccattccttcactgacattagagcctacttcttgggactccagtgtatact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agagcacatccattccttcactgacattagagcctacttcttgggactccagtgtatact 800
Query: 601 gaagaccattctcatggactgtgcactactagattcttggactttccattcatctgccat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaagaccattctcatggactgtgcactactagattcttggactttccattcatctgccat 860
Query: 661 tgttggattacctagattgttggtgtgtgtgtgtgtgtgtgtgtgt 706
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 861 tgttggattagctagattgttggtgtgtgtgtgtgtgtgtgtgtgt 906
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
