BAC Information

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BAC

Clone NameMSMg01-332J02
Chromosome19 (Build37)
Map Location 38,925,240 - 38,925,808
singlet/doubletsinglet
Overlap geneTbc1d12
Upstream geneLOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l
Downstream geneHells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332J02.T7 (MSMg01no332_j02.b1)MSMg01-332J02.TJ (MSMg01no332_j02.g1)
ACCAG448563AG448564
length1,1541,320
length of high quality
(start - end)
---592 (137 - 728)
definitionCHROMAT_FILE: MSMg01no332_j02.b1 PHD_FILE: MSMg01no332_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:09 2005CHROMAT_FILE: MSMg01no332_j02.g1 PHD_FILE: MSMg01no332_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGCGGGCCGNNNNNNAACATTGGGCGNTATGACTCCTATGGGAGAGGTC
CGCGGAATTCAGTCTTAGNANCGTTTCTTAGGGTTCTGAAAGGGAGGAAA
GANGGGAGGGAGGGTCGTAGAAAGGCCGGGAGGNANNNNNNNGNNNNNNG
NNANNNNNGGGNNNGGGNGGGGNNGGNNNGAGNGNNGGNGGGNNGGGNGN
GGNGGNNNGGGGGGGNGGGGGGGGNGGGGGGGGGGGGGGNGNGGNNNNGN
NGGNNGNNGGNGGGNGNGGGNGGGGGGNNNNGGGGNGGGGNGGGGGGGGG
NGNGGGGGGGNNNGGGNNGNNNGGGGNGGGGGGGNNGGGNNGGGGGGGGN
NGGNGNGGGGGGNNNGNNGGGGGNGGGNGGGGGGGNNGGNGGGNGGNNNG
GGGGNNGGGNGGGGGNNNGNGGGGGGGGGGGGGGNNNGNGGNNGNGNGGG
GGGGGNNGNNGGGGGGGGGGGNNGGNNGGGGGNNNGNGGGGGGGNNGGNG
GGGNGGNNGNGGGGNNGGNGGGGGGGGGGGGGGGGGGGNNGGGGNNGGGG
GGGNNGGGGGGGGGGNGNNNNNGGGGGGGGGGGGNNGGGGGGGGGGGNGG
GGGNGGGGGNNNGGGGGGNNGGGGGGGGGGGGGNGGGGGGGGGNNNGGNN
GGGGGGGGGNGGGGGGGGGGGNGGGNNNGGGGGGGNGGGGGGGGGGGGGG
NGGNNGGGGGGGGGGGGGGGGGGGGGNNNGGGNGGGGGGNNGGGNNGGGG
GGNGGNGGGGGNNNNNGNNGGGGGNGGNGGGGGGGGGGGNNNNNNNNGGG
GGGGGGGGGGGNNGGGGGGGGGGNNGGNGGGNGGGGGGGGGGGGGGGNGG
GNGGGGGGGGGGGGNGGGNGGNNGGNGGGGGGGGGGGNNGGGGGGGNNGG
GGGGGGGGGGNNGGGNNNGGGNGGNGGGGGGGGGGGGNNGGGGGGGGGGG
GGGGGGGGGGGNNGGGGGGGGGGGGGNNGGGNGNGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGNGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGG
NNGNNGGGGGGGGGGGGGGGGGGGNNGGGGGGGGGGGGGGGGGNGGGGGG
GGGGGGNNGGNGGGGGGGGGGGGGGGGGGNGGNGNGGGGGGGGGGGGGGG
GGGG
CCCCTCCCCCCTAAAAACATGCCAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGCCCTCTAAAGGCCCCATCCATGNC
NGCCTCCCACAGAACTGAGATTTTAGAATTGCTGCTGGCTATCAGAACTC
AGCATATTGAGTAGCAAGCACTTTACCAACTGAACCATCTCCCAGCCCTA
CCCTGAAGTATTTGTTCATTGTTTTTTGAGACCAGGTTTGTGTAGCTCTG
GCTGTCCTGGAACTTGCCTTGTAGACCAGGCTACCCTTGAACTCACAGAG
CTCTGCCTGCCTCTGCTTCCTAGTGATGAGACTAAAAAAAAGTATGTATC
ACCATGGCCCTGCCCTTAATTGTTAAATAAAATGTTTTATCTATTTTCCT
AATGCACAGTGTATATAATAGACCCCAATAAAATTGTTGAATAAATAAAG
AATCGCACACTAGCTAGTAAGAACTATGTGTGTGGGTTAGGCATGGTAGG
GCATATCTAAAATCTCAGTACTCAAGTGGTGGAAGTTCTAAGCTAGTCTG
GACTATTTGACTAGATCCCATTTCATCCAAAGTCCTATGAAGAACTGACT
TATTTCTTGTGGTTCTGGAAGGCATATCAAAACTATGATATTGTGCTTCA
ACATGAAGAACACTATACTGATACCTTCAGCTGGCTGCCTTGAGAAAGTG
AACTCAGGTTGAAACAATTCAAACAGGGTAAGTAACCGTCCCGTAAACCC
TCAAAATCCGCCCCCAAGCTCTGCTCTCCTTGGTAATGCTGGGTTTCATT
GATATTTTGCTAATGTGCGAAATTCCAACTGTAACCAAAGATATCTTGAA
ATTTCCTATATGAAGGTGTGCTTCCTACAAAATGAACAACTAAAATTGCC
CGACCGGTGTTTTAAATGATCTTAATAAAAAACAAAAAAGTCTTACCTCC
CTTGCTGAAATAAAGTGACTGGCCTAATCTTTTGACCCCTAACTCAGGAC
ATAATGGGCTAACCCTCTCCACCCAGGAACAGTTTCCGAGTCACCTGGAA
CTCTCCAAGGCCAGAACTGGGTTCCCACCTTTTTGGTTCTTGGGGGCTTA
ATTCTGTTTTTAAGAAGAACCCACTCTAACGGTGGCCCTCTTGGCGCCCT
AATTAAAAAAATACTTCTCTTGAAACCCCACCTCCCCCCCAATAAAAGGG
GCCACTAAAGGGGCCGACCCTACCCACCCCTCCTTAAATGGCCCCGTCTT
CTAGAAAACACCCACCTTTCTACTGAAATTCTCCGTAACACCAACATTTC
TTGTGTTCTTGGGCACACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_j02.g1 MSMg01no332_j02.g1 CHROMAT_FILE:
MSMg01no332_j02.g1 PHD_FILE: MSMg01no332_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:09 2005
         (592 letters)



>mm_chr19_38924817_38925808
          Length = 992

 Score = 1064 bits (550), Expect = 0.0
 Identities = 565/570 (99%), Gaps = 2/570 (0%)
 Strand = Plus / Minus

                                                                       
Query: 24  agtagcaagcactttaccaactgaaccatctcccagccctaccctgaagtatttgttcat 83
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 992 agtagcaagcactttaccaactgaaccatctcccagcccta-ccggaagtatttgttcat 934

                                                                       
Query: 84  tgttttttgagaccaggtttgtgtagctctggctgtcctggaacttgccttgtagaccag 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 tgttttttgagaccaggtttgtgtagctctggctgtcctggaacttgccttgtagaccag 874

                                                                       
Query: 144 gctacccttgaactcacagagctctgcctgcctctgcttcctagtgatgagact-aaaaa 202
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 873 gctacccttgaactcacagagctctgcctgcctctgcttcctagtgatgagactaaaaaa 814

                                                                       
Query: 203 aaagtatgtatcaccatggccctgcccttaattgttaaataaaatgttttatctattttc 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aaagtatgtatcaccatggccctgcccttaattgttaaataaaatgttttatctattttc 754

                                                                       
Query: 263 ctaatgcacagtgtatataatagaccccaataaaattgttgaataaataaagaatcgcac 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ctaatgcacagtgtatataatagaccccaataaaattgttgaataaataaagaatcgcac 694

                                                                       
Query: 323 actagctagtaagaactatgtgtgtgggttaggcatggtagggcatatctaaaatctcag 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 actagctagtaagaactatgtgtgtgggttaggcatggtagggcatatctaaaatctcag 634

                                                                       
Query: 383 tactcaagtggtggaagttctaagctagtctggactatttgactagatcccatttcatcc 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tactcaagtggtggaagttctaagctagtctggactatttgactagatcccatttcatcc 574

                                                                       
Query: 443 aaagtcctatgaagaactgacttatttcttgtggttctggaaggcatatcaaaactatga 502
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 573 aaagtcctatgaagaactgacttatttcttgtggttctagaaggcatatcaaaactatga 514

                                                                       
Query: 503 tattgtgcttcaacatgaagaacactatactgataccttcagctggctgccttgagaaag 562
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 513 tattgtgcttcaacatgaagaacactgtactgataccttcagctggctgccttgagaaag 454

                                         
Query: 563 tgaactcaggttgaaacaattcaaacaggg 592
           ||||||||||||||||||||||||||||||
Sbjct: 453 tgaactcaggttgaaacaattcaaacaggg 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)