Query= MSMg01no332_j20.b1 MSMg01no332_j20.b1 CHROMAT_FILE:
MSMg01no332_j20.b1 PHD_FILE: MSMg01no332_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:15 2005
(526 letters)
>mm_chr19_48419896_48420821
Length = 926
Score = 971 bits (502), Expect = 0.0
Identities = 520/526 (98%)
Strand = Plus / Minus
Query: 1 tgcggagcactcaagcacttaagattagcattggaaggatttacttctggggtagcttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tgcggagcactcaagcacttaagattagcattggaaggatttacttctggggtagcttta 667
Query: 61 agaagcaaaacagtagccaatgcaaataggccctgaggaccagcagcagcccaaggatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 666 agaagcaaaacagtagccaatgcaaataggccctgaggaccagcagcagtccaaggatgt 607
Query: 121 caggttctggtccctacctacacaatgccctgcaatgcactgacacagagcccagacctt 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 606 caggttctggtccctacctacacaatgccctgcaatgcaccgacacagagcccagacctt 547
Query: 181 tagagattcttttaactgagaacagatccagactttggggctttaaatgtcccaaatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tagagattcttttaactgagaacagatccagactttggggctttaaatgtcccaaatatt 487
Query: 241 ttggaagatattaaaactctaaatctcccccgagacagttatctcttcacccagggtgag 300
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 486 ttggaagatattaaaactctaaatctcccccgagacagctaactcttcacccagggtgag 427
Query: 301 gctatgagatcatttctctggtcaggcctggtgaattactggtaatggaaaacatcacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gctatgagatcatttctctggtcaggcctggtgaattactggtaatggaaaacatcacag 367
Query: 361 acacatcgagggactcccaacatgcagagaccattacacagagacccaatcccaatggta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acacatcgagggactcccaacatgcagagaccattacacagagacccaatcccaatggta 307
Query: 421 tcccccaaactcatctctgctccccacctccagaaagttctatggctaaatgatgtaagt 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 306 tcccccaaactcatctctgctccccaccttcagaaagttctatggctaaatgatgtaagt 247
Query: 481 aaaataagaaagacctagaggtcatcaggacagatgaacaagaaga 526
||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 246 aaaataagaaagacccagaggtcatcaggacagatgaacaagaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_j20.g1 MSMg01no332_j20.g1 CHROMAT_FILE:
MSMg01no332_j20.g1 PHD_FILE: MSMg01no332_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:15 2005
(638 letters)
>mm_chr19_48255778_48256815
Length = 1038
Score = 1091 bits (564), Expect = 0.0
Identities = 603/622 (96%), Gaps = 10/622 (1%)
Strand = Plus / Plus
Query: 17 gaagaattcaatgactctcaagcccctctagattaccaatggaggctgaaagggagtcgg 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 217 gaagaattcaatgactctcaagcccctctagattaccaatggaggctgaaagggaatcgg 276
Query: 77 agaaacaagccccaagacattgttagcctgcaaagggaccagaaatggggtggcatcact 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agaaacaagccccaagacattgttagcctgcaaagggaccagaaatggggtggcatcact 336
Query: 137 tctgaaatggtaagtcagtaagagatggaacctagctgagatgaatccaacgttctgcat 196
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cctgaaatggtaagtcagtaagagatggaacctagctgagatgaatccaacgttctgcat 396
Query: 197 aatagtatttattaagaacttacaacatgactgatgcattgctaagcactttgtgtaggg 256
|| |||||||||||||||| || ||||||||||||||| ||||||||||||
Sbjct: 397 aa----------taagaacttacaacattaccgatgcattgctaagcgctttgtgtaggg 446
Query: 257 tccttgtttaaccttcagcacaatctgcagggagggctatgactctctgagctttacaga 316
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 447 tccttgtttaaccttcagcacaatctgcagggagggcgatgactctctgagctttacaga 506
Query: 317 tactcaacttcagggatttccctcctacagccagtgaaaggttaccacttcccaaagcag 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tactcaacttcagggatttccctcctacagccagtgaaaggttaccacttcccaaagcag 566
Query: 377 ctgctgaaaagtgtgcaggtggaggggcttccctgaagcccaggcttccctgtactcatt 436
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctgctgaaaagtatgcaggtggaggggcttccctgaagcccaggcttccctgtactcatt 626
Query: 437 aattcattaaacagctgttgctagagcttcttctacctgggcagaagtgtgtttccttgt 496
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 627 aattcattaaacagctgttgctagagcatcttctacctgggcagaagtgtgtttccttgt 686
Query: 497 acttgtggtatgcatgcatgtgcatgcatgtggggacccacacacacattcacatgcatc 556
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 687 acttgtggtatgcatgcatgtgcatgcatgtggggacccacacatacattcacatgcatc 746
Query: 557 tagtcactgtgtgtgagatgaagacaggaaagacattgaagggtaggaagaaggcagatt 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tagtcactgtgtgtgagatgaagacaggaaagacattgaagggtaggaagaaggcagatt 806
Query: 617 gacttaaggcctcttagaacta 638
||||||||||||||||||||||
Sbjct: 807 gacttaaggcctcttagaacta 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
