Query= MSMg01no332_l19.b1 MSMg01no332_l19.b1 CHROMAT_FILE:
MSMg01no332_l19.b1 PHD_FILE: MSMg01no332_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:30 2005
(564 letters)
>mm_chr19_49081657_49082620
Length = 964
Score = 1075 bits (556), Expect = 0.0
Identities = 562/564 (99%)
Strand = Plus / Minus
Query: 1 aattatgtaaatatactcagttcacttaaaataaattagcattgtggcaggatgaaagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 aattatgtaaatatactcagttcacttaaaataaattagcattgtggcaggatgaaagca 705
Query: 61 tgctatttagtggctattctgccttttattgctagaatgggtgcacacaaaatctccagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tgctatttagtggctattctgccttttattgctagaatgggtgcacacaaaatctccagt 645
Query: 121 gcttacttatatagctatattattggtgaaaattgctataagccaccacaacctgtgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gcttacttatatagctatattattggtgaaaattgctataagccaccacaacctgtgtct 585
Query: 181 ctgcttctcattcttagagaacattaaaattattgtaaagtttttcatattttaatactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctgcttctcattcttagagaacattaaaattattgtaaagtttttcatattttaatactg 525
Query: 241 ctcttcaagcctcaactttatgattctgattcattaaatcaaaagtgaggccaagatgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ctcttcaagcctcaactttatgattctgattcattaaatcaaaagtgaggccaagatgtg 465
Query: 301 ccagaaagaacaagagcttttgatccagaaatgacttccctacattacctgccatttaac 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 464 ccagaaagaacaagagcttttgatccagaaatgactttcctacattacctgccatttaac 405
Query: 361 cctgacaaatgtcacagttaataataaaataatagaatcaattggaattgaaatcatagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cctgacaaatgtcacagttaataataaaataatagaatcaattggaattgaaatcatagg 345
Query: 421 tgattttaataactactgttatttaacattgtaaagaaataaaggggaaattggatatga 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 344 tgattttaataactactgttatttaacattgtaaagaaataaaggggaaattagatatga 285
Query: 481 gacaagacttttagaaattaggaacagtgtatatgttctgcagatgatattaattatatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gacaagacttttagaaattaggaacagtgtatatgttctgcagatgatattaattatatc 225
Query: 541 atagggaatcttggggtgtgattg 564
||||||||||||||||||||||||
Sbjct: 224 atagggaatcttggggtgtgattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_l19.g1 MSMg01no332_l19.g1 CHROMAT_FILE:
MSMg01no332_l19.g1 PHD_FILE: MSMg01no332_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:31 2005
(627 letters)
>mm_chr19_48905509_48906534
Length = 1026
Score = 1044 bits (540), Expect = 0.0
Identities = 616/666 (92%), Gaps = 44/666 (6%)
Strand = Plus / Plus
Query: 1 tgctatgcctgctatttcattggtatgcctttacataatttctgcccactcatgacttga 60
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 201 tgctatgcctgctatttcattggtatg-ttttacataatctctgcccactcatgacttga 259
Query: 61 tttttcaatatattcatataacatatccatttttctcttaactgtatgctttggtttctg 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttttttaatatattcatataacatatccatttttctcttaactgtatgctttggtttctg 319
Query: 121 atctaaggaacttatcctaagaaaggctgtcccaattattatggaaagatgtatagcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atctaaggaacttatcctaagaaaggctgtcccaattattatggaaagatgtatagcttt 379
Query: 181 atattaagatctataattaactttgagttgaattttatattaatttaaaatacaggctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atattaagatctataattaactttgagttgaattttatattaatttaaaatacaggctta 439
Query: 241 ggtatttttatctcttcttctatatgaatactaaattgctctagtaccattttgagaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggtatttttatctcttcttctatatgaatactaaattgctctagtaccattttgagaaaa 499
Query: 301 gtgtcatttcttaattggactatactagtcattttctcaattgttttgactatgtaccat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgtcatttcttaattggactatactagtcattttctcaattgttttgactatgtaccat 559
Query: 361 tgtctttatactgcaaacattatgcctttattttatgtcattgtgactgtaatattatat 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 560 tgtctttatactgcaaacattatgcctttattttatgtcattatgactgtaatattatat 619
Query: 421 tggaaattataaacatagtttaattagcagcatgagaaataaattaaaattaatgatata 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tggaaattataaacatagtttcattagcagcatgagaaataaattaaaattaatgatata 679
Query: 481 tatat--tactaaaccatatatgtgtgtgtgtgtgtgtggtatatatatctatatctata 538
||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 680 tatatattactaaaccatatatatgtgtgtgtgtg----gtatatatatctatatctata 735
Query: 539 catctcatt--tatatatat--atatatatatata-tatatatatatatata-------- 585
||||||||| ||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 736 catctcattaatatatatattaatatatatatataatatatatatatatataatatatat 795
Query: 586 ------------------------tgtggtttagttataagtgtaagattaccaactttg 621
||||||||||||||||||||||||||||||||||||
Sbjct: 796 tatattatatatataatatatatatgtggtttagttataagtgtaagattaccaactttg 855
Query: 622 ttctct 627
||||||
Sbjct: 856 ttctct 861
Score = 60.7 bits (31), Expect = 3e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 556 tatatatatatatatatatatatatatatat 586
|||||||||||||||||||||||||||||||
Sbjct: 96 tatatatatatatatatatatatatatatat 66
Score = 60.7 bits (31), Expect = 3e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 554 tatatatatatatatatatatatatatatat 584
|||||||||||||||||||||||||||||||
Sbjct: 96 tatatatatatatatatatatatatatatat 66
Score = 60.7 bits (31), Expect = 3e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 552 tatatatatatatatatatatatatatatat 582
|||||||||||||||||||||||||||||||
Sbjct: 96 tatatatatatatatatatatatatatatat 66
Score = 60.7 bits (31), Expect = 3e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 550 tatatatatatatatatatatatatatatat 580
|||||||||||||||||||||||||||||||
Sbjct: 96 tatatatatatatatatatatatatatatat 66
Score = 60.7 bits (31), Expect = 3e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 548 tatatatatatatatatatatatatatatat 578
|||||||||||||||||||||||||||||||
Sbjct: 96 tatatatatatatatatatatatatatatat 66
Score = 60.7 bits (31), Expect = 3e-13
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 549 atatatatatatatatatatatatatatata 579
|||||||||||||||||||||||||||||||
Sbjct: 66 atatatatatatatatatatatatatatata 96
Score = 60.7 bits (31), Expect = 3e-13
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 551 atatatatatatatatatatatatatatata 581
|||||||||||||||||||||||||||||||
Sbjct: 66 atatatatatatatatatatatatatatata 96
Score = 60.7 bits (31), Expect = 3e-13
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 553 atatatatatatatatatatatatatatata 583
|||||||||||||||||||||||||||||||
Sbjct: 66 atatatatatatatatatatatatatatata 96
Score = 60.7 bits (31), Expect = 3e-13
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 555 atatatatatatatatatatatatatatata 585
|||||||||||||||||||||||||||||||
Sbjct: 66 atatatatatatatatatatatatatatata 96
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 557 atatatatatatatatatatatatatatat 586
||||||||||||||||||||||||||||||
Sbjct: 66 atatatatatatatatatatatatatatat 95
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 548 tatatatatatatatatatatatatatata 577
||||||||||||||||||||||||||||||
Sbjct: 67 tatatatatatatatatatatatatatata 96
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 102
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 627
Length of database: 1026
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1016
Effective search space: 626872
Effective search space used: 626872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
