BAC Information

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BAC

Clone NameMSMg01-332N22
Chromosome19 (Build37)
Map Location 54,741,335 - 54,742,028
singlet/doubletsinglet
Overlap genenone
Upstream geneRbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
Downstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332N22.T7 (MSMg01no332_n22.b1)MSMg01-332N22.TJ (MSMg01no332_n22.g1)
ACCAG448784AG448785
length1,2711,242
length of high quality
(start - end)
498 (132 - 629)696 (91 - 786)
definitionCHROMAT_FILE: MSMg01no332_n22.b1 PHD_FILE: MSMg01no332_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:47 2005CHROMAT_FILE: MSMg01no332_n22.g1 PHD_FILE: MSMg01no332_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGCGGCTTTTNGNNAATCTTCGGGCTAAGACTCCTATGGGAGAGGAT
CCGCGGAATTCATTGTTTTTAAAGCTCTAACTACCCCGCTGTGNAAATGN
ANNANATTTTCTGTACCTTTTACTCCCCTGAGGGACATCGGGGNNCTTTC
CAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGT
GTCCTTCTGGGTACATGCCCAGGAGAGGTATTGCTGGATCCTCCAGTAGT
ATTATGTCCAATTTTCTGAGGAACTGCCAGACTGATTTCCAGAGTGATTG
TATCAGCTTGCAATCCTACCACCAATGGAAGAGTGTTCCTCTTTCTCCAC
ATCCTTGCCAGCATCTGCTGTCACCTGAATTTTTTATCTTAGCCATTCTG
ACTGGTTTTAGGTGGAATCTCAGGGTTGTTTGGATGTGTATTTCCCTGAT
AATTAATGATGTTGAACATTTTTTCAGGCATTCCTCAACCATTTGGTATA
CCTCAGTTGAGAATTCTTTGTTTAGCTCTGTAACCTATTTTTAAAATAGG
GTTATTTGATTTTCTGTAGTCCAGCTTCTTGAGTTCTTTGTATATATTTG
ATATTAGNCTCCTATTGGATTTAGGATTGGGAAAGATCCTTTCCCAATCT
GTTGGTGGGCTTTTTGTCTTATTGACAGCGCCTTTTGGCCTTCAGAAGAA
TTTGCATTTTATGAGGGCGCATTTGTTGATTCTCGAGCTTTTAGGACCAG
GCATTGGTCTTTTGGTTAGGAATGCTGGTTTTTTTTCTCCTGGACCAAAT
TTTTGAGGGGTTTCCTCATTTCTTCCTCAAAAAAATTAAAGGNANTGGGG
TNATGTGGGAGTNTTTGGTTTAATTAAAAAATGAGGTTTGGTTTGGGGGA
GAAAAAGAAAAAAAAATTTTNANAGTTTTGANAGTGGAANGGGNAGTGGT
AGGATANNAANTTGTGGTAGAAGGGGGGAGTTTTTTTTAGGGGGGGAGGG
AGAGTTTNTTGNTGCCTTTGAGGAGGAGGATGGGGAGTATCAGCTCGTTC
GATGGTTTCAAAATNAAGATTGGATCTAGGTTGTGAATTGCTCNGGGAAA
AGGTGAGAAAGTCATACNATACTTAGTAGGTATTTATGAAATGTCTGTCA
TAATGTNGTAAAGCCGTCACTAGGTAGTTGTTTATTGNANAGCTATNTAG
TAGTATTACTTTGCNGAGTTTCGCGTCTNTNATGTGTCCCATAACGGTGT
TTAAACTGCTATCTGCTGTAA
NCCGCTCATTNNNAACAGATGCGTAGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAGATATCTGAGGGCCAACC
CTTGCCATGAACTGGAACTTTATATTCCCAACCTCTACTCTTTCTGCTCT
GGCTGCCATTGCTGAAACCTGCGGCTGCCACGGTCAATGCCATCGAAATA
ATTTCTGCCAGCGAAGGCGTTCCTGTCAAGGATGCCAGAGACATTGCTGA
CACCCACATTCCAGGCTCCTATTGCCACACCACTCACAAAATACAAGCTG
CTCACAGGGAATCTGGGATACAGTGTCGACTGTTTATATAGAAGATGATT
GGTATGGACACCAATGCATGCTACTGTGAAATGGAGAAAAAAAATCCTTC
CTGCCTGTCTTTATAGAGACAGACATTCAGTGCTCTATTCTAATAGCAGG
GTAACATGTAACTGTTAACAGAGTTAGAGATGTGGACGCATCTACCAACA
GAGATAAATCTAGAAAAATACAAGGTTGAAATAAAAACATAGGAGAAAGC
CTTATGTTCCTCACAGGTGAGTTTTCATGCAACGAGATATTCAAATTATT
TAGAATAGTTAGCAAACACATTGGAGAGAATGAATCATAAAAATATTAAT
CTCCCTGAACTGATGCAAGGATTAGATGAGATACCACGCCCAAATACTCT
GGTACAATGTCTGTCCCTAAAGTGTGGTACTCAGAGGAAACTGGTTCCAT
CCCTCCCAGAATCCCGACCTCACATTCCCATTGCAAGGATTTTGTAGCTC
ACCAATGGCTTTCAGATCCACTAGGTTTTCATTGTATCATCAAAATGGCC
AGTGGATTTGGGATCCCCCAAAAGCTTGACTTGNCTTTCTCATTGTTTTT
CCAGACAGGGACACAGTGACTTCTTGAGAACCAGAGAAAGCTCACCCTGC
TGCCCCATGGCTGGNCAAAGCTTCCTTTGGCAGCTATAAAAAAAAAGGCT
GCAGGGGGCCCCCACTAAACTGCTAACCTGCTGTTTGCCTGGAAATTCCT
GGAACTCCAAACCCTCCAAAAAAAAAGCCCCCCCTGGGAATCCCCCAAAA
AAGGTCCCCTTTCACGGGTCTTGAAAACCACCAAAAAGCAATGGGGTTCC
CCCCTCCTCCCCTTGGGTTTGTCCCAATAATTTTATTATAATGGAAAAGA
AAATTGGCCCTTCTCCCCACAGACCGGCGGGGGTCGAAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_n22.g1 MSMg01no332_n22.g1 CHROMAT_FILE:
MSMg01no332_n22.g1 PHD_FILE: MSMg01no332_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:47 2005
         (696 letters)



>mm_chr19_54741132_54742229
          Length = 1098

 Score = 1249 bits (646), Expect = 0.0
 Identities = 682/696 (97%), Gaps = 6/696 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gccaacccttgccatgaactggaa--ctttatattcccaacctctactctttctgctctg 61
           ||||||||||||||||||||||||  ||  ||||||||||||||||||||||||||||||
Sbjct: 204 gccaacccttgccatgaactggaagcct--atattcccaacctctactctttctgctctg 261

                                                                       
Query: 62  gctgccattgctgaaacctgcggctgccacggtcaatgccatcgaaataatttctgccag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gctgccattgctgaaacctgcggctgccacggtcaatgccatcgaaataatttctgccag 321

                                                                       
Query: 122 cgaaggcgttcctgtcaaggatgccagagacattgctga--cacccacattccaggctcc 179
           | ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 322 caaaggcgttcctgttaaggatgccagagacattgctgagacacccacattccaggctcc 381

                                                                       
Query: 180 tattgccacaccactcacaaaatacaagctgctcacagggaatctgggatacagtgtcga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tattgccacaccactcacaaaatacaagctgctcacagggaatctgggatacagtgtcga 441

                                                                       
Query: 240 ctgtttatatagaagatgattggtatggacaccaatgcatgctactgtgaaatggagaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctgtttatatagaagatgattggtatggacaccaatgcatgctactgtgaaatggagaaa 501

                                                                       
Query: 300 aaaaatccttcctgcctgtctttatagagacagacattcagtgctctattctaatagcag 359
           ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 502 aaaaacccttcctgcctgtctttatagagacagatattcagtgctctattctaatagcag 561

                                                                       
Query: 360 ggtaacatgtaactgttaacagagttagagatgtggacgcatctaccaacagagataaat 419
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 562 ggtaacatgtaactgttaacagagttagagatgtggatgcatctaccaacagagataaat 621

                                                                       
Query: 420 ctagaaaaatacaaggttgaaataaaaacataggagaaagccttatgttcctcacaggtg 479
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 622 ctagaaaaatacaaggttgaaataaaaacataggagaaagccttgtgttcctcacaggtg 681

                                                                       
Query: 480 agttttcatgcaacgagatattcaaattatttagaatagttagcaaacacattggagaga 539
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 682 agttttcatgcaacgagatattcaaattatttagaacagttagcaaacacattggagaga 741

                                                                       
Query: 540 atgaatcataaaaatattaatctccctgaactgatgcaaggattagatgagataccacgc 599
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 742 atgaatcataaaaatattaatctccctgaactgatgcaagggttagatgagataccacgc 801

                                                                       
Query: 600 ccaaatactctggtacaatgtctgtccctaaagtgtggtactcagaggaaactggttcca 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ccaaatactctggtacaatgtctgtccctaaagtgtggtactcagaggaaactggttcca 861

                                               
Query: 660 tccctcccagaatcccgacctcacattcccattgca 695
           ||||||||||||||||||||||||||||||||||||
Sbjct: 862 tccctcccagaatcccgacctcacattcccattgca 897


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1098
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1088
Effective search space:   746368
Effective search space used:   746368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)