Query= MSMg01no333_l04.b1 MSMg01no333_l04.b1 CHROMAT_FILE:
MSMg01no333_l04.b1 PHD_FILE: MSMg01no333_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:56 2005
(341 letters)
>mm_chr19_59333555_59334294
Length = 740
Score = 613 bits (317), Expect = e-180
Identities = 335/341 (98%), Gaps = 1/341 (0%)
Strand = Plus / Minus
Query: 1 ttggctttggagtttccgaacccaaaggctctgacttgagccacagaatcagtgatttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttggctttggagtttccgaacccaaaggctctgacttgagccacagaatcagtgatttat 481
Query: 61 gacatgtaagcactcttgccagatgcaggaacccccagtctgatatttcctagattactg 120
|||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 480 gacatgtaagcattcttgccagacgcaggaa-ccccagtctgatatttcctagattactg 422
Query: 121 tgctctgaagagttatacaggctttcctcacttggcttctcccggctctgaaaaattgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgctctgaagagttatacaggctttcctcacttggcttctcccggctctgaaaaattgga 362
Query: 181 cctcctgatggatagcagaaagaattagtctgaacacagagtatggaacacattgggaga 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 361 cctcctaatggatagcagaaagaattagtctgaacacagagtatggaacacatggggaga 302
Query: 241 gcccaagtatccatttaaccagttgagtgctaccaactccagtcagcaccatggtgggtg 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 301 gcccaagtatccatttaaccagttgagtgctaccaactccaatcagcaccatggtgggtg 242
Query: 301 ctcgtgaaacattaatgagtagaggggaccacatcttccca 341
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctcgtgaaacattaatgagtagaggggaccacatcttccca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 740
Length adjustment: 9
Effective length of query: 332
Effective length of database: 731
Effective search space: 242692
Effective search space used: 242692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_l04.g1 MSMg01no333_l04.g1 CHROMAT_FILE:
MSMg01no333_l04.g1 PHD_FILE: MSMg01no333_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:56 2005
(345 letters)
>mm_chr19_59187431_59188173
Length = 743
Score = 648 bits (335), Expect = 0.0
Identities = 342/345 (99%), Gaps = 2/345 (0%)
Strand = Plus / Plus
Query: 1 tctgggaaggagagctgaaatttcctattagtccctatctgacccctttttggggttaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgggaaggagagctgaaatttcctattagtccctatctgacccctttttggggttaat 260
Query: 61 agctatgtaaaagctaaatagtgtttcgaaatcatttaaatctgaggcaaacctgtgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctatgtaaaagctaaatagtgtttcgaaatcatttaaatctgaggcaaacctgtgaaa 320
Query: 121 caccattatattctccctaccgttcaattcagagagagagagagagagaagccgtgcgcg 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 caccattatattctccctaccgttcaattcagagagagagagagaga--agccgtgcgcg 378
Query: 181 tgcattagtaagatagtgctgcttgaattgaggcagagacggtgttgtgtagaaggaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgcattagtaagatagtgctgcttgaattgaggcagagacggtgttgtgtagaaggaggc 438
Query: 241 caatcggttggtgctgacggttgtgtttctctgagacttaagtggtgtggcttgcccttt 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 439 caatcggttggtgctgacggttgtgtttctctgaggcttaagtggtgtggcttgcccttt 498
Query: 301 ccatagaaaactctattgaaaagagaattgttatctagacattaa 345
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccatagaaaactctattgaaaagagaattgttatctagacattaa 543
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 743
Length adjustment: 9
Effective length of query: 336
Effective length of database: 734
Effective search space: 246624
Effective search space used: 246624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
