Query= MSMg01no334_m17.b1 MSMg01no334_m17.b1 CHROMAT_FILE:
MSMg01no334_m17.b1 PHD_FILE: MSMg01no334_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:20 2005
(547 letters)
>mm_chr19_58187359_58188306
Length = 948
Score = 118 bits (61), Expect = 1e-30
Identities = 91/101 (90%), Gaps = 3/101 (2%)
Strand = Plus / Minus
Query: 416 cacagtgctccactctggtgtcaaagagctccactgtggtgtcacagtgctccactatgg 475
||||||||| |||| |||||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 703 cacagtgctgcactgtggtgtcacagtgctccactgtggtgtcacagtgctccactgtgg 644
Query: 476 tgacccacg-gctccactgtggtgtcacagtgctc-actgg 514
|| | || | ||||||||||||||||||||||||| |||||
Sbjct: 643 tgtcaca-gtgctccactgtggtgtcacagtgctccactgg 604
Score = 114 bits (59), Expect = 1e-29
Identities = 116/135 (85%), Gaps = 5/135 (3%)
Strand = Plus / Minus
Query: 383 ccactgtgatgtcaaaatgctacactgttttgacacagtgctccactctggtgtcaaaga 442
|||||||| ||||| | |||| |||||| || |||||||||||||| |||||||| ||
Sbjct: 715 ccactgtggtgtcacagtgctgcactgtggtgtcacagtgctccactgtggtgtcacagt 656
Query: 443 gctccactgtggtgtcacagtgctccactatggtgacccacg-gctccactgtggtgtca 501
||||||||||||||||||||||||||||| ||||| | || | ||||||||| |||||||
Sbjct: 655 gctccactgtggtgtcacagtgctccactgtggtgtcaca-gtgctccactggggtgtca 597
Query: 502 c-agtgctc-actgg 514
| | ||||| |||||
Sbjct: 596 cta-tgctccactgg 583
Score = 108 bits (56), Expect = 8e-28
Identities = 109/128 (85%), Gaps = 4/128 (3%)
Strand = Plus / Minus
Query: 384 cactgtgatgtcaaaatgctacactgttttgacacagtgctccactctggtgtcaaagag 443
||||||| ||||| | |||| |||||| || |||||||||||||| |||||||| || |
Sbjct: 693 cactgtggtgtcacagtgctccactgtggtgtcacagtgctccactgtggtgtcacagtg 634
Query: 444 ctccactgtggtgtcacagtgctccactatggtgacccacg--gctccactgtggtgtca 501
|||||||||||||||||||||||||||| |||| | || ||||||||| |||||||
Sbjct: 633 ctccactgtggtgtcacagtgctccactggggtgtc--actatgctccactggggtgtca 576
Query: 502 cagtgctc 509
||||||||
Sbjct: 575 cagtgctc 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 547
Length of database: 948
Length adjustment: 10
Effective length of query: 537
Effective length of database: 938
Effective search space: 503706
Effective search space used: 503706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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