BAC Information

Click to search

BAC

Clone NameMSMg01-335G03
Chromosome19 (Build37)
Map Location 25,929,558 - 25,929,814
singlet/doubletsinglet
Overlap genenone
Upstream genePgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335G03.T7 (MSMg01no335_g03.b1)MSMg01-335G03.TJ (MSMg01no335_g03.g1)
ACCAG450651AG450652
length742782
length of high quality
(start - end)
259 (35 - 293)33 (75 - 107)
definitionCHROMAT_FILE: MSMg01no335_g03.b1 PHD_FILE: MSMg01no335_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:07 2005CHROMAT_FILE: MSMg01no335_g03.g1 PHD_FILE: MSMg01no335_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTGCA
TTCCTCAGTATGGAAGGTATAGGATGCAAAGTGGTAGAGGGACAAAGAAT
GCCACTCTCCCTGTTGGTGGTGATACTACTATATGGTCCAGGGCAGAGGG
AGTGGGGTGGGGCTGAATCGTTGGCTCTTGTAATAGCACTGTTTATGCAA
TCCTTGCCATGACCTTCTGATGGGGAGTACACTTCCTGTCCTTTACATTT
CCTTTGGCCATATGACTTGCTTTGGCTAGTGGGATGTTGGGCAATAAGAC
ACAAGCTGATGCCTTTGGCCTTGTTCTTTGCTCTGCCATCACTGTGAGAA
CCTCACTGGGTAGCATGAATCCCAACAGATAATACGAAGTATAAAATTTA
CCCAGATATTGTCAGATCCTAATCCTAAATGATAGCCATTGCTGTTCACC
CACTTAACATGTATATCCCAGTATTAGCGTGTTGATGACTTGCTTGTCAG
GATTTATTGCTTATAGATTAACGTGATCTTGTTTCCCGACTGTTGTTCCC
CACCCTTGGATACCCCAAATTGATTCCTATATTTTTCTTTCGCCTTTGCC
ATAATTTGACTCAACTCTTCCCCCCTTACCCCCGTATTCCCTAGTATTAT
ATTCCGCCTTTCTTCTTCTTCCACGGCCCCACATACATTCACTTATCCTG
TTTTTTCTTCTTCTCTCTTGCCTTTTTTATGCCCCCCCCTTA
ATTGTTTTGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGCTCTGGTAATTCATAATTT
TATGACAACTGTCCATAAGAAGGATTAGATGATTAGCAATTTTCACAATA
TTTTAGAATCAATTAAAAATTTTGCCTTTAGAGCATTCTGGCTTTATATA
TAATATTTAAGATAAACATAATGTTTTGAAATGCTTATATACAATCTAGC
GAATTACCGTTATATCCTGATATAGATCTTATATTTATGTGGAATCTAGA
ACTATATCGAATATACACAAATAGAGACTGGGCCGGTTTGTTCATGGTTT
ATAGCTGTTTTTCCCGTGAGACACCTTGAATACCCGCCTGTTGTCCATCG
TCTGCACTTATTGTCCCACTTCCACTATTGTATCACAGACATTTGCCTGA
TTCATTTTTTTAGCCCACCTCATGTCCTTTTTGATTTCTCTACTTATGCC
TCTTCACCTTTTCTATTTAGCCTCCCACCACTGTGTCCCATCACCTCTGC
CCCCTCTGTCTGCCCTTCCCTTGTTTCTGCTCTTTTTTTCTTTCCCCTCT
TTTTTTTTCTCCTGTTTTTTTTTCCTTACCCCCGCTGTTCTTACCCTTTT
TTCCCTCTCCCCACACCTTCTTTCGCCTATTTTTTTTCTTTCTCGCCCCT
CTATTCTCCTTCTCCCCTATTTCACCCTTCCTTTACTCCTTCCCAATTAC
CAATCTTCTTATTTTTGTCCTCCCTCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_g03.b1 MSMg01no335_g03.b1 CHROMAT_FILE:
MSMg01no335_g03.b1 PHD_FILE: MSMg01no335_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:07 2005
         (259 letters)



>mm_chr19_25929437_25930095
          Length = 659

 Score =  447 bits (231), Expect = e-130
 Identities = 250/257 (97%), Gaps = 2/257 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgcattcctcagtatggaaggtataggatgcaaagtggtagagggacaaaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaattcattgcattcctcagtatggaaggtataggatgcaaagtggtagagggacaaaga 319

                                                                       
Query: 65  atgccactctccctgttggtggtgatactactatatggtccagggcagagggagtggggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atgccactctccctgttggtggtgatactactatatggtccagggcagagggagtggggt 259

                                                                       
Query: 125 ggggctgaatcgttggctcttgtaatagcactgtttatgcaatccttgccatgaccttct 184
           ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 258 ggggccgaatcgttggctcttgtaatagcactgtttatgcagtcctcgccatgaccttct 199

                                                                       
Query: 185 gatggg--gagtacacttcctgtcctttacatttcctttggccatatgacttgctttggc 242
           ||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 198 gatgggcagagtacacttcctgccctttacatttcctttggccatatgacttgctttggc 139

                            
Query: 243 tagtgggatgttgggca 259
           |||||| ||||||||||
Sbjct: 138 tagtggaatgttgggca 122


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)