Query= MSMg01no336_e24.b1 MSMg01no336_e24.b1 CHROMAT_FILE:
MSMg01no336_e24.b1 PHD_FILE: MSMg01no336_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:21 2005
(497 letters)
>mm_chr19_59073106_59074002
Length = 897
Score = 804 bits (416), Expect = 0.0
Identities = 419/420 (99%)
Strand = Plus / Minus
Query: 78 ccttctggtttttcctcatatgcagccctggctggcttggaacttgaaatgctcttcatg 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 ccttctggtttttcctcatatgcagccctggctggcttggaacttgaaatgctcttcatg 838
Query: 138 cctttgcctcctaaggaatggggctataagtatgcaccactatagccattttatagggtg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 cctttgcctcctaaggaatggggctataagtatgcaccactatagccattttatagggtg 778
Query: 198 ctgggggtccgtccaaaggcttccccaaggctgcaagcctactaggcaagcactggatta 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ctgggggtccgtccaaaggcttccccaaggctgcaagcctactaggcaagcactggatta 718
Query: 258 gccaagctgtttccagctccatgaaagtctttgtcactaagttcattctctcaaagtact 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gccaagctgtttccagctccatgaaagtctttgtcactaagttcattctctcaaagtact 658
Query: 318 tcctgcctgctgaaaacatgtccactgcccacctctagccccgtgtctcttttccaagta 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tcctgcctgctgaaaacatgtccactgcccacctctagccccgtgtctcttttccaagta 598
Query: 378 aaacccggggccagtagaatcgctcccgaggagcctctccaaccgtctcacaggaagtgc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aaacccggggccagtagaatcgctcccgaggagcctctccaaccgtctcacaggaagtgc 538
Query: 438 ttcaggctcagctctctttcagaccccattccagcccaaccctagttattatgcacagtt 497
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 537 ttcaggctcagctctctttcagactccattccagcccaaccctagttattatgcacagtt 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_e24.g1 MSMg01no336_e24.g1 CHROMAT_FILE:
MSMg01no336_e24.g1 PHD_FILE: MSMg01no336_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:21 2005
(505 letters)
>mm_chr19_58878445_58879349
Length = 905
Score = 862 bits (446), Expect = 0.0
Identities = 481/505 (95%), Gaps = 19/505 (3%)
Strand = Plus / Plus
Query: 1 tcagctccttctccagcactgtgtctacctgcctgcctccatgctccctgcctgcctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tcagctccttctccagcactgtgtctacctgcctgcctccatgctccctg---------- 269
Query: 61 tgctccctgggagggagctaccagctacataccagctaaaacagagaccaagctttctgt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ---------ggagggagctaccagctacataccagctaaaacagagaccaagctttctgt 320
Query: 121 gacctgggtactatgctaaatacctaacagataggaactcacgttactcccacaacaacc 180
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gacctgggtactatgctaaatgcctaacagataggaactcacattactcccacaacaacc 380
Query: 181 atttgaggtaagcagaattattagtcttatttccatagtaaacataaaactgaggcatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgaggtaagcagaattattagtcttatttccatagtaaacataaaactgaggcatgg 440
Query: 241 ataagttgagtcgctcgcttgcttaagagcacactgtgcatagggtcagaactcggggca 300
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataagtcgagtcgcttgcttgcttaagagcacactgtgcatagggtcagaactcggggca 500
Query: 301 agccaacttacttgctcttcctcaatgcatgctccacgctgtggccccggaacttcttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agccaacttacttgctcttcctcaatgcatgctccacgctgtggccccggaacttcttgt 560
Query: 361 agtagtcaatgaaggagaagggcagagtgatgttcaggggattggttcgatctggtgcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtagtcaatgaaggagaagggcagagtgatgttcaggggattggttcgatctggtgcag 620
Query: 421 cagctcttttgcgagactcanaggcaatcattaggtcaacccaggctgccgggcgtttga 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagctcttttgcgagactcaaaggcaatcattaggtcaacccaggctgccgggcgtttga 680
Query: 481 tcttgaactgttcgataaaatcctc 505
|||||||||||||||||||||||||
Sbjct: 681 tcttgaactgttcgataaaatcctc 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
