BAC Information

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BAC

Clone NameMSMg01-336J12
Chromosome19 (Build37)
Map Location 51,688,261 - 51,911,471
singlet/doubletdoublet
Overlap geneLOC100042924, LOC100042928, LOC668536
Upstream geneSorcs1
Downstream geneLOC100042936, Ins1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336J12.T7 (MSMg01no336_j12.b1)MSMg01-336J12.TJ (MSMg01no336_j12.g1)
ACCAG451574AG451575
length738742
length of high quality
(start - end)		532 (41 - 572)526 (71 - 596)
definitionCHROMAT_FILE: MSMg01no336_j12.b1 PHD_FILE: MSMg01no336_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:41 2005CHROMAT_FILE: MSMg01no336_j12.g1 PHD_FILE: MSMg01no336_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,910,944 - 51,911,471)(51,688,261 - 51,688,786)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTTTATATTGTTGTTATATATTAAAGAGATAAAAAATTCTGTCATTCTA
TGTATCTCAAAGTAGAAAAGTAATTCCACTTTTTGATGTTTGACCTTTTA
GCCTAGAAAATGGAAGTCCATATATTTGAGTGGGTCAGATATAAAGAAGT
TAGTTGGAGTGTTTAGATGAAGTCTACATCATCTGGGAACATGTGGGTAT
AATTCATAATTCAAGTTTTTTATTCATAGTTCCCATGGCAATTCAATGCT
TTTTTCGTAAGTAAATCAATTAATTATTGTTTCATGTCAGATTTGATCTA
AGCTTGTATTGATAACGGTATAAAAGAATATATGTTAGCACATTTCCCTC
TGCGCTCACCATATGGTTCAGAAGATAAGTTGCAAGGCTCTTTCAACATT
AGAGAAGTGAAAACGGTTGAATGAATTTGACTAGATTTTCTAGACCAGAA
TCTAGGACGCTCTCCCTAGCTGAGGAATGCTACAGACCCAGTTACTCCAT
CCTGGGACAACTGTAAACCCCTACAATCTTGTTTGAGAACCAAAGATGTG
TTTCTTTCACACAAATGACTGGTTTTACTAACATTTGTTTCCTCTTGAGG
GATTGTTCTGTTTTATTGAGCAAGCATTGCGAAGGCTTTTCTAAGGGGGT
ACTTCCAATGGTGGTTGGCGGCCAGGCCCCCTCCTGGG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTCTGTATATCAGACTGGCATCAGATCCA
CAGAGTTCGGTTGGCCTCTACCTCCTGTACATTTGGATGTATGTTGAAGT
ATATGTGTCTACCACCTGGTAGTTACCTAATACTTTTAAATATTCTGTTC
CTGTACTTAATAATCCCTTTATTCCCTTCTTCAGAATACAGATTATTTGT
TTCAGAAAATTGCCCCAATTAATTAATTTATAGGCTAAATCTAGTCTCAC
TTTCTTAATAGGAAAGGAATTACTATATTTGTTTCTTTTGACTTTTGGCA
TTGGTGATGTGTTTTTGCTTTCCAATCTTGCTGATATAAAGTCCTGGAAA
CTAATGTGTATGAGCACCTTAAATTATTATTCTGAAAAAGGTAATTACCT
GATTAAAACATAAATGATGATGAAGAGCTTAAACAGGCCAAGAGTCAATT
GCAATTTTTCTTGAGCTCTTGCATTCCTCTTAATAGNTTTCTATTGCCCA
CCTCTTTATCACACCTAACACCTATCACTATGACATGAAATGTTTAGATA
TATTAGCTTATTTAATCACCAGCTGCCACTAAGCTCAAAGCTATGAATGT
CATCCGCCTATATGAACCCTATTTCCGAAGTTCCCTGCATTCCAAAAACA
AAATTCCAAATTTCAAAAAAAAAAGCCGTGGGTACCTATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_j12.b1 MSMg01no336_j12.b1 CHROMAT_FILE:
MSMg01no336_j12.b1 PHD_FILE: MSMg01no336_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:41 2005
         (532 letters)



>mm_chr19_51910740_51911671
          Length = 932

 Score =  967 bits (500), Expect = 0.0
 Identities = 521/528 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttttatattgttgttatatattaaagagataaaaaattctgtcattctatgta 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gaattctttttaaattgttgttatatattaaagagataaaaaattctgtcattctatgta 673

                                                                       
Query: 65  tctcaaagtagaaaagtaattccactttttgatgtttgaccttttagcctagaaaatgga 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 672 tctcaaagtagaaaagtaattccacttttcgatgtttgaccttttagcctagaaaatgga 613

                                                                       
Query: 125 agtccatatatttgagtgggtcagatataaagaagttagttggagtgtttagatgaagtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agtccatatatttgagtgggtcagatataaagaagttagttggagtgtttagatgaagtc 553

                                                                       
Query: 185 tacatcatctgggaacatgtgggtataattcataattcaagttttttattcatagttccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tacatcatctgggaacatgtgggtataattcataattcaagttttttattcatagttccc 493

                                                                       
Query: 245 atggcaattcaatgcttttttcgtaagtaaatcaattaattattgtttcatgtcagattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atggcaattcaatgcttttttcgtaagtaaatcaattaattattgtttcatgtcagattt 433

                                                                       
Query: 305 gatctaagcttgtattgataacggtataaaagaatatatgttagcacatttccctctgcg 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 432 gatctaagcttgtattgataacggtataaaagaatatatgttagcacatttccccctgca 373

                                                                       
Query: 365 ctcaccatatggttcagaagataagttgcaaggctctttcaacattagagaagtgaaaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 372 ctcaccatatggttcagaagataagttgcaaggctctttcaacattagagaagtgaaaat 313

                                                                       
Query: 425 ggttgaatgaatttgactagattttctagaccagaatctaggacgctctccctagctgag 484
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 312 ggttgaatgaatttgactagatttcctagaccagaatctaggacgctctccctagctgag 253

                                                           
Query: 485 gaatgctacagacccagttactccatcctgggacaactgtaaacccct 532
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaatgctacagacccagttactccatcctgggacaactgtaaacccct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no336_j12.g1 MSMg01no336_j12.g1 CHROMAT_FILE:
MSMg01no336_j12.g1 PHD_FILE: MSMg01no336_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:41 2005
         (526 letters)



>mm_chr19_51688061_51688986
          Length = 926

 Score =  996 bits (515), Expect = 0.0
 Identities = 523/526 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtatatcagactggcatcagatccacagagttcggttggcctctacctcctgtac 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 actctgtatatcagactggcatcagatccacagagttctgttggcctctacctcctgtac 260

                                                                       
Query: 61  atttggatgtatgttgaagtatatgtgtctaccacctggtagttacctaatacttttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttggatgtatgttgaagtatatgtgtctaccacctggtagttacctaatacttttaaa 320

                                                                       
Query: 121 tattctgttcctgtacttaataatccctttattcccttcttcagaatacagattatttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattctgttcctgtacttaataatccctttattcccttcttcagaatacagattatttgt 380

                                                                       
Query: 181 ttcagaaaattgccccaattaattaatttataggctaaatctagtctcactttcttaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcagaaaattgccccaattaattaatttataggctaaatctagtctcactttcttaata 440

                                                                       
Query: 241 ggaaaggaattactatatttgtttcttttgacttttggcattggtgatgtgtttttgctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaaggaattactatatttgtttcttttgacttttggcattggtgatgtgtttttgctt 500

                                                                       
Query: 301 tccaatcttgctgatataaagtcctggaaactaatgtgtatgagcaccttaaattattat 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 tccaatcttgctgatataaagtcctggaaattaatgtgtatgagcaccttaaattattat 560

                                                                       
Query: 361 tctgaaaaaggtaattacctgattaaaacataaatgatgatgaagagcttaaacaggcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgaaaaaggtaattacctgattaaaacataaatgatgatgaagagcttaaacaggcca 620

                                                                       
Query: 421 agagtcaattgcaatttttcttgagctcttgcattcctcttaatagntttctattgccca 480
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 agagtcaattgcaatttttcttgagctcttgcattcctcttaatagttttctattgccca 680

                                                         
Query: 481 cctctttatcacacctaacacctatcactatgacatgaaatgttta 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctctttatcacacctaacacctatcactatgacatgaaatgttta 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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