Query= MSMg01no336_m11.b1 MSMg01no336_m11.b1 CHROMAT_FILE:
MSMg01no336_m11.b1 PHD_FILE: MSMg01no336_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:56 2005
(505 letters)
>mm_chr19_19545349_19546253
Length = 905
Score = 696 bits (360), Expect = 0.0
Identities = 439/471 (93%), Gaps = 13/471 (2%)
Strand = Plus / Minus
Query: 39 atatctcttcaaatatgtttagttgttttgagtagcccctatgatctaagcattagtgtt 98
||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 905 atatctcttcagatatgcttagttgttttgagtagcccctatgatttaagcattagtgtt 846
Query: 99 acattaacctacagttgaggaagtatggtttttaaatgagatgtaatctcttcagaagta 158
|||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct: 845 acattaacctacagttgaggaaatatgatttttgaatgagatgtaatctcttcagaagta 786
Query: 159 aacacaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacttatacatatgcatat 218
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 aacacaa--------tgtgtgtgtgtgtgtgtgtgtgtgtgtacttatacatatgcatat 734
Query: 219 acttacata-atatata--tatatgtattttctatgtattttatttttcaaaatcagtcc 275
||||||| | ||||||| | | ||||||||||||||||||||||||||||||| |||||
Sbjct: 733 acttacacacatatatatgtgtgtgtattttctatgtattttatttttcaaaataagtcc 674
Query: 276 ctgaattgcatgtaatctaaatatttcccaaaaggaaatgcgaa-gcattctccccacaa 334
||||| ||||||||||||||||| ||| |||||| |||| | || | |||||||||||||
Sbjct: 673 ctgaaatgcatgtaatctaaatacttctcaaaagaaaatac-aacgtattctccccacaa 615
Query: 335 tgtacaagattccaaatcctgccctgacacccactatggagattttattttttcttttct 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgtacaagattccaaatcctgccctgacacccactatggagattttattttttcttttct 555
Query: 395 tacctctccttcacattgcaaacttttctctgataagagcaaagggaagcacacaagagg 454
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 554 tacctctccttcacattgcaaacttttctctgataagagcaaaaggaagcacacaagaga 495
Query: 455 cacctcagatcttacagggtctcanaagaatatgccttcagagaaacactg 505
|||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 494 cacctcagatcttacagggtctcaaaagaatatgccttcagagaaacactg 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_m11.g1 MSMg01no336_m11.g1 CHROMAT_FILE:
MSMg01no336_m11.g1 PHD_FILE: MSMg01no336_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:56 2005
(475 letters)
>mm_chr19_19435400_19436274
Length = 875
Score = 797 bits (412), Expect = 0.0
Identities = 445/458 (97%), Gaps = 4/458 (0%)
Strand = Plus / Plus
Query: 1 tactctccagcatcctgctttgctgcctattccctcatacctcttcctccatgagaggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactctccagcatcctgctttgctgcctattccctcatacctcttcctccatgagaggta 260
Query: 61 ggcctagtaaaagctgtcattctttcttagtactctttctttgctctgttatttctgggg 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcctagtaaaagctgttattctttcttagtactctttctttgctctgttatttctgggg 320
Query: 121 tggtttctactcttattccctctccctctagtgttaagtcctgaggttttctgagacctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtttctactcttattccctctccctctagtgttaagtcctgaggttttctgagacctt 380
Query: 181 gcatcacttgttagagttttagaaataacgctgtgtatatccacatgggagtagtgtatg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gcatcacttgttagagttttagaaataacgctgtgtatatccacatgggagtagtgtagg 440
Query: 241 tgatatttgaaggcagtgaatccttttgactttcattaaactatgtcatgatttctcctc 300
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 ggatatttgaaggcagtgaatccttttgactttcattaaaccatgtcatgatttctcctc 500
Query: 301 ctctttaattaggggcttgatttccaaaagcagataccttggactgcatggggtgaaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctttaattaggggcttgatttccaaaagcagataccttggactgcatggggtgaaaga 560
Query: 361 agctacgcttaggctatcagtgcttgtcaatgtacgtagatacaaaaggatacatatata 420
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 561 agctacgcttaggctatcagtgcttgtcaatgtacatagatacaaaaggatatatatata 620
Query: 421 tgtgtatatgggtgtgtgcctctgtgtgtgtgtgtgtg 458
||||| | || ||||||| ||||||||||||||||
Sbjct: 621 tgtgtgtgtgtgtgtgtg----tgtgtgtgtgtgtgtg 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
