BAC Information

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BAC

Clone NameMSMg01-337B09
Chromosome19 (Build37)
Map Location 12,963,653 - 12,964,138
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445
Downstream geneOlfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337B09.T7 (MSMg01no337_b09.b1)MSMg01-337B09.TJ (MSMg01no337_b09.g1)
ACCAG451949AG451950
length750765
length of high quality
(start - end)		595 (40 - 634)485 (76 - 560)
definitionCHROMAT_FILE: MSMg01no337_b09.b1 PHD_FILE: MSMg01no337_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:21 2005CHROMAT_FILE: MSMg01no337_b09.g1 PHD_FILE: MSMg01no337_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:21 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCTTTACTTAGCTCTGAACCCCATTTTTTAATGGGGTTGTTTGAATT
TCGGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCCC
TATCAGATTTAGGATTGATAAAAATCCTTTCCCAATCTGTTGGTGGCCTT
TTTGTCTTATTGACAGTGTCTTTTTCTTACAGAAGCTTTGCAATTTTATG
AGGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGATCT
GTTTAGGAATTTTTCCCCTGTGCCCATATCTTCGAGTCTTTTCCCCACTT
TCTCCTCTATTAATTTCAGTGTCTCTGGTTTTATGTGGAGGTCTTTGATC
CACTTAGACTGGAGCTTTATACAAGGAGATAAGAATGGATCAATTTACAT
TCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGACAATGC
TGCCTTTTTTCCACTGGATGGTTTTAGCTCTCTTGTCAAAGATCAAGTGA
CAATAGGTGTGTGGGTTCATCTCTGGGTCTTTAATTCTGTTCCATTGGTC
TACTTGTCTGTTGCTATACCAGTATCATGCAGTTTTTATCACAATTGCTC
TGTAGTACAGCTTAATGTGATTCCACCAGAGGAATCATGGTGATTCACCC
AAAGTTATTTTATTGTTGAGAATAATTTTTGCTACCCAAGTTTTATTTTT


CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGAAATATTGTCGAAGACATACC
AGTAATGTAGTGAAGTGAACACATAAAATTAAGCACCATAAATATCCACT
TTAAACACACCTTTCTATAAAATTCACCATACTCACACGCATATTATGAA
CACCTCCATGCATTTCTCCGTTCATGGTATTCATTTTAAATTGCTTTGTG
TGTATTTGAATTGATATGTAATAGGAAAAATACATGTAGTTAAGTGATAG
ATAAGTAATCTTAATGGGATTTTGAAAACTGTAAACTATTGTTATCATCC
AAGTATACAATTCTGTATAAAATATTTTCCAAGAATTTTGAAAGAAGTAA
GGATATCATTTTATCTACTTGAATTTATTGTGGACTTCAACACTAATTTA
GTACAGGGAGGAGATCTGAGAAGAATCAAATTATAAACATCACCATACAA
AATTAAATTAAACCCATTTTTTTTCCTTTTAGGAAATGAATTCATTCTTT
ATCCTTAATAATGTAGTATCAATTTTATAAATGCATTCTTCACCTCCTTT
GTTCTCAGGCTGTAGACTANAGGATTCTCCCTAGGAATGAACCTGTTGTA
AAAATACGAAGGTACTTTTGGCTGTTGCCCTGGAATGAATGGAATTGGGC
TGTAAAAAATGAAAATGAAAGTTCCCTAAAAAAGGAACCTGCCTTGGAAT
GAGAGACCCCGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_b09.g1 MSMg01no337_b09.g1 CHROMAT_FILE:
MSMg01no337_b09.g1 PHD_FILE: MSMg01no337_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:21 2005
         (485 letters)



>mm_chr19_12963453_12964339
          Length = 887

 Score =  489 bits (253), Expect = e-142
 Identities = 428/495 (86%), Gaps = 22/495 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggaaatattgtcgaagacataccagtaatgtagtgaagtgaacacataaaattaagca 60
           ||||||||||| || ||||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 201 ttggaaatattttcaaagacataccagtaatgcagtgaagtgaagacataaaattgagca 260

                                                                       
Query: 61  ccataaatatccact-ttaaacacacctttctataaaattc-accatactcacacgcata 118
           ||||| || |||| | ||||||||||| ||||||||||||| | |||| |||   |||||
Sbjct: 261 ccatatatgtcca-tgttaaacacaccattctataaaattcaagcatattcatgtgcata 319

                                                                       
Query: 119 ttatgaacacctccatgcatttctccgttcatggtattcatttt-aaattgctttgtgtg 177
           ||||||||||||||||||||||||| |||  ||||||| ||||| |||||| ||||||||
Sbjct: 320 ttatgaacacctccatgcatttctctgtttgtggtatttattttaaaattgttttgtgtg 379

                                                                       
Query: 178 tatttgaattgatatgtaataggaaaaat--acatgtagttaagtgatagataagtaatc 235
           ||| || ||||| ||||||||||||||||  ||||        ||||||||| |||| ||
Sbjct: 380 tatctgcattgacatgtaataggaaaaatacacat--------gtgatagatcagtagtc 431

                                                                       
Query: 236 ttaatgggattttgaaaactgtaaactattgt-tatcatccaagtatacaattctgtata 294
           |||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| ||||
Sbjct: 432 ttaatgggattttgaaaactgtaaactattgtatatcatcaaagtttacaattctctata 491

                                                                       
Query: 295 aaatattttccaagaattttgaa--agaagtaaggatatcattttatctacttgaattta 352
           ||||||||||||||| |||||||  |||||||| ||||||||||||| ||||||||||||
Sbjct: 492 aaatattttccaagagttttgaagaagaagtaaagatatcattttatttacttgaattta 551

                                                                       
Query: 353 ttgtggacttcaacactaatttagtacagggaggagatctgagaagaatcaaattataaa 412
           |||||||||||||| |||||| |||| ||| |||||||||||||||||| ||||||  ||
Sbjct: 552 ttgtggacttcaactctaattcagtataggtaggagatctgagaagaatgaaattacgaa 611

                                                                       
Query: 413 catcaccatacaaaattaaattaaacccatttttttt-----ccttttaggaaatgaatt 467
           | | |||||||||| ||||| |||| || ||||||||     |||||| |||||||||| 
Sbjct: 612 ctttaccatacaaagttaaagtaaatcctttttttttttttaccttttcggaaatgaatg 671

                          
Query: 468 cattctttatcctta 482
           ||||||| |||||||
Sbjct: 672 cattcttcatcctta 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 887
Length adjustment: 10
Effective length of query: 475
Effective length of database: 877
Effective search space:   416575
Effective search space used:   416575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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