Query= MSMg01no337_b24.b1 MSMg01no337_b24.b1 CHROMAT_FILE:
MSMg01no337_b24.b1 PHD_FILE: MSMg01no337_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:24 2005
(633 letters)
>mm_chr19_38030708_38031740
Length = 1033
Score = 1158 bits (599), Expect = 0.0
Identities = 621/629 (98%), Gaps = 2/629 (0%)
Strand = Plus / Plus
Query: 1 gcagataggaagaggattactgtacctcgtgtcttctataacttcatctatcagcttcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagataggaagaggattactgtacctcgtgtcttctataacttcatctatcagcttcag 260
Query: 61 ccacacctccgccaactggtttgcaggaattttaccctggatccctgattttacagcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacacctccgccaactggtttgcaggaattttaccctggatccctgattttacagcctc 320
Query: 121 tatgtttgattgctgaagaatcaagaaagaggagagataattgtgtaactctgccattat 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 tatgtttgattgctgaagaatcaagaaagaggagagataattgtgtaattctgccattat 380
Query: 181 gtccaagaaagtgttatttccaaggcagggtagagggtgggtagaggggtagggacataa 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 gtccaagaaagtgttatttccaaggcagggtagagggtgagtagaggggtagggacataa 440
Query: 241 aaagattttgttacagaaagccagagggctttgttctcactcactgatacttaccatagc 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagatttcgttacagaaagccagagggctttgttctcactcactgatacttaccatagc 500
Query: 301 ctcgtgctatttacttttattcaaaatgcaatcaacactgataagtttaagcaatagaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcgtgctatttacttttattcaaaatgcaatcaacactgataagtttaagcaatagaga 560
Query: 361 aagccttgtcttgtattttgaactttggaactatgtaaatattttatgtactccaaaaat 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagccttgtcttgtattttgacctttggaactatgtaaatattttatgtactccaaaaat 620
Query: 421 aaacaggaagaaaccatcaggaataggtgagggaaccctcaaaaggatatatatgtaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacaggaagaaaccatcaggaataggtgagggaaccctcaaaaggatatatatgtaaat 680
Query: 481 agtatggactcagttatatttcagatggacagttgaactaacccac--gtaacctgtgaa 538
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
Sbjct: 681 agtatggactcagttatatttcagatggacagttgaactaacccacacgtaacctttgga 740
Query: 539 aacagcattttaactatctgtccttagtttcaaggcaaaggcaacccaactgcatcaaac 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacagcattttaactatctgtccttagtttcaaggcaaaggcaacccaactgcatcaaac 800
Query: 599 atgaatcattgtgaacttgttcacagtgg 627
|||||||||||||||||||||||||||||
Sbjct: 801 atgaatcattgtgaacttgttcacagtgg 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_b24.g1 MSMg01no337_b24.g1 CHROMAT_FILE:
MSMg01no337_b24.g1 PHD_FILE: MSMg01no337_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:24 2005
(482 letters)
>mm_chr19_38199461_38200343
Length = 883
Score = 903 bits (467), Expect = 0.0
Identities = 479/483 (99%), Gaps = 1/483 (0%)
Strand = Plus / Minus
Query: 1 tttccctctcctttttctcttcctgagccagttttcctcgctgttctggaaataaataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tttccctctcctttttctcttcctgagccagttttcctcgctgttctggaaataaataaa 624
Query: 61 tcctaatatggcttagaaataaaaatgcatggtaaacacttggcaattatgtttttcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcctaatatggcttagaaataaaaatgcatggtaaacacttggcaattatgtttttcagt 564
Query: 121 gtggtttcaggggagtgtggcaagagaagtggacgatcaaccacttggccattggcgctg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 563 gtggtttcaggggagtgtggcaagagaagtggacgatcaaccactcggccattggcgctg 504
Query: 181 agaaaatatttcctgtcctgaccaggttgcgtttctagagaatatttaacagggagcggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agaaaatatttcctgtcctgaccaggttgcgtttctagagaatatttaacagggagcggt 444
Query: 241 ttagtccttctaaagatgatgaaatgaaagaataaatattgacccaaacagcaccacaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttagtccttctaaagatgatgaaatgaaagaataaatattgacccaaacagcaccacaac 384
Query: 301 tcatcaaagagtaaaatatgccctttctcaaaggggg-aaaaaaaacagccaaaatatgc 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 383 tcatcaaagagtaaaatatgccctttctcaaagggggaaaaaaaaacagccaaaatatgc 324
Query: 360 caaaaagcttctcacaactgctcctcagtagaagcaggggccacttgggaaagccagggc 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caaaaagcttctcacaacagctcctcagtagaagcaggggccacttgggaaagccagggc 264
Query: 420 ctggacactaatgttccaggctacatcataggtcccttttcgctcagtgaggccaccatc 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctggacgctaatgttccaggctacatcataggtcccttttcgctcagtgaggccaccatc 204
Query: 480 acc 482
|||
Sbjct: 203 acc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 883
Length adjustment: 10
Effective length of query: 472
Effective length of database: 873
Effective search space: 412056
Effective search space used: 412056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
