Query= MSMg01no337_f03.b1 MSMg01no337_f03.b1 CHROMAT_FILE:
MSMg01no337_f03.b1 PHD_FILE: MSMg01no337_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:40 2005
(490 letters)
>mm_chr19_54968549_54969438
Length = 890
Score = 706 bits (365), Expect = 0.0
Identities = 439/487 (90%), Gaps = 38/487 (7%)
Strand = Plus / Plus
Query: 5 gaattctttcatcttccttgccagtgaaatgcaagcaaaatcaagacgtatgcataaacc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcatcatccttgccagtgaaatgcaagcaaaatcaagacgtatgcataaacc 264
Query: 65 aatggtgtctctaggttccaagacagttctctgttgtagatcccataggaggagacccac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatggtgtctctaggttccaagacagttctctgttgtagatcccataggaggagacccac 324
Query: 125 agaagtccagggtcaggaaataccagatgtagccagaaactttaaaggaaaaaa-gatct 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 agaagtccagggtcaggaaataccagatgtagccagaaactttaaaggaaaaaaagatct 384
Query: 184 agattataaaaaaaggggtgatatgcaggcaggggagtcatttgtgtgcttagataaggt 243
|||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 tgatt-tataaaaaggggtgatatgcagacaggggagtcatttgtgtgcttagataaggt 443
Query: 244 tcctgaatatatcaagtccaaccagaatttaaacataagtgcgtgctacatgaatagtcc 303
||||||||||||||| |||||||||||||| ||||||||| |||||||||||| |||||
Sbjct: 444 tcctgaatatatcaactccaaccagaatttgaacataagtaagtgctacatgaagagtcc 503
Query: 304 agtagaaacctctacatcaaacttttcctttaataaccagaaggaagaggaataaacaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agtagaaacctctacatcaaacttttcctttaataaccagaaggaagaggaataaacaca 563
Query: 364 cacacacacacacacacacacacacacacacacacacacacacacacacacacacacact 423
||||||||||||||||||||||| |
Sbjct: 564 cacacacacacacacacacacac------------------------------------t 587
Query: 424 cagccttgatagagtgaacaaggatttatcaataatttggttccatgtaaattaaagaag 483
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 588 cagccttgatagagtgaacaaggatttatcaataatttggttccatgtaagttaaagaag 647
Query: 484 gaatcag 490
|||||||
Sbjct: 648 gaatcag 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_f03.g1 MSMg01no337_f03.g1 CHROMAT_FILE:
MSMg01no337_f03.g1 PHD_FILE: MSMg01no337_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:40 2005
(269 letters)
>mm_chr19_55153826_55154494
Length = 669
Score = 497 bits (257), Expect = e-145
Identities = 266/269 (98%)
Strand = Plus / Minus
Query: 1 caagttgtgtactgtggtgcccttgagcacctgaacacgacactggtcatgagattaatg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 469 caagttgtgtactgtggtgcccttgagcaccttaacacgacactggtcatgagattaatg 410
Query: 61 aatgtagagataggatggagcctgatgctgtgacttcagacctgctctttccctgctcgg 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 409 aatgtagagataggatggagcctgatgctgtgacttcaaacctgctctttccctgctcgg 350
Query: 121 gtatgctggcttttcaccatgggtacccacaaggacaggagactacagtccatggcgtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gtatgctggcttttcaccatgggtacccacaaggacaggagactacagtccatggcgtgc 290
Query: 181 atgctatggcacttagtccaggtccctttagagctccagagggggcctgcaatttgggtc 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 289 atgctatggcacttagtccaggcccctttagagctccagagggggcctgcaatttgggtc 230
Query: 241 ttggtatttcattaaaggcattttgttga 269
|||||||||||||||||||||||||||||
Sbjct: 229 ttggtatttcattaaaggcattttgttga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
