Query= MSMg01no338_n18.b1 MSMg01no338_n18.b1 CHROMAT_FILE:
MSMg01no338_n18.b1 PHD_FILE: MSMg01no338_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:35 2005
(524 letters)
>mm_chr19_9094291_9095211
Length = 921
Score = 946 bits (489), Expect = 0.0
Identities = 515/525 (98%), Gaps = 5/525 (0%)
Strand = Plus / Minus
Query: 1 aaggacgatcgaggttatcctccagcccctaccacctccttccatgctgctcctcctgct 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 531 aaggacgatcgaggttatcctccagcccctactgcctccttccatgctgctcctcctgct 472
Query: 61 gagagggcccctgcaggatggagaccttctgttctatagtcactgcctccagcctgagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gagagggcccctgcaggatggagaccttctgttctatagtcactgcctccagcctgagcc 412
Query: 121 tgatggaagaacacctgaaaggttccttgaggtttaatggccagttactgcccacccatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgatggaagaacacctgaaaggttccttgaggtttaatggccagttactgcccacccatt 352
Query: 181 ctactt-aagactcccaactctcccagccaagaagttattacctgaaggtcttgggagtc 239
||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 351 cta-ttcaagactcccaactctcccagcc---aagttattacctgaaggtcttgggagtc 296
Query: 240 tcatcatctccactatatgtgtcatttcacccaaccccacaccctttttcaggattcaaa 299
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 295 tcatcatctccactaaatgtgtcatttcgcccaaccccacaccctttttcaggattcaaa 236
Query: 300 gcattccagatttcagtatccattacagtcatttggtctgacaccgggtcttagcatcta 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 235 gcattccagatttcagtatccattacagtcatttggtctgacaccgggccttagcatcta 176
Query: 360 gccatggtgctcaataagtatttactgaatgagtgaacacttcaatctaactagctacac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gccatggtgctcaataagtatttactgaatgagtgaacacttcaatctaactagctacac 116
Query: 420 ctctccttcctcaagctaaacataaatgagttgatgtacaattggacagcttggacactt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ctctccttcctcaagctaaacataaatgagttgatgtacaattggacagcttggacactt 56
Query: 480 ctgtctaggatatcttcccaatatcctagcagtcaacttcccaac 524
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 ctgtctaggatatcttcccaatatcctagcagtcaacttcccaac 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 921
Length adjustment: 10
Effective length of query: 514
Effective length of database: 911
Effective search space: 468254
Effective search space used: 468254
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_n18.g1 MSMg01no338_n18.g1 CHROMAT_FILE:
MSMg01no338_n18.g1 PHD_FILE: MSMg01no338_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:35 2005
(553 letters)
>mm_chr19_8898493_8899445
Length = 953
Score = 1009 bits (522), Expect = 0.0
Identities = 547/558 (98%), Gaps = 5/558 (0%)
Strand = Plus / Plus
Query: 1 attttctgacttgaccaggtaactcagaatctcccaatgaaagaaggctgcacagaagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttctgacttgaccaggtaactcagaatctcccaatgaaagaaggctgcacagaagtc 260
Query: 61 tctctccttagagttgggtggtctgttgatttttcctgttcacagcttggtaaggtgatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctccttagagttgggtggtctgttgatttttcctgttcacagcttggtaaggtgatt 320
Query: 121 ttgtaacttcttgtttgtgtttgttaccatcttgcctactctggagacatggcaggcaga 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ttgtaacttcttgtttgtgtttgttaccatctcgcctactctggagacatggcaggcaga 380
Query: 181 taattgatcgttgactctcctaggtgaagatgagttctcctacggttttgacggaagagg 240
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tgattgatcgttgactctcctaggtgaagacgagttctcctacggttttgacggaagagg 440
Query: 241 actcaaggcagaaaacgggcagtttgaggaatttggccagacttttggggagaatgatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcaaggcagaaaacgggcagtttgaggaatttggccagacttttggggagaatgatgt 500
Query: 301 tattggctgttttgctgtgagtgttcctgaaaattgtgaatttgtagcaaagggtagata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattggctgttttgctgtgagtgttcctgaaaattgtgaatttgtagcaaagggtagata 560
Query: 361 aaaggctaagaggattctgctatgcttcctatcaatatggacttttatacatttgatgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaggctaagaggattctgctatgcttcctatcaatatggacttttatacatttgatgca 620
Query: 421 ttgcttggttatttgagatgtgcaatggccccagcattcatttatttgcttatttctata 480
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 621 ttgcttggttatttgagatgtgcaatagccccagcattcatttatttgcttatttctaca 680
Query: 481 tttatttgtgggagagggtgcatatcaaaatatttatgtggaattcaggacagttct--- 537
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 tttatttgtgggagagggtgcatatcaaaatatttatgtggaagtcaggacagttctctc 740
Query: 538 --atctgacccatctctc 553
||||||||||||||||
Sbjct: 741 ctatctgacccatctctc 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
