BAC Information

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BAC

Clone NameMSMg01-339C15
Chromosome19 (Build37)
Map Location 37,872,158 - 38,048,409
singlet/doubletdoublet
Overlap geneLOC209281, Fer1l3
Upstream geneTnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251
Downstream geneCep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339C15.T7 (MSMg01no339_c15.b1)MSMg01-339C15.TJ (MSMg01no339_c15.g1)
ACCAG453519AG453520
length730746
length of high quality
(start - end)		599 (46 - 644)540 (81 - 620)
definitionCHROMAT_FILE: MSMg01no339_c15.b1 PHD_FILE: MSMg01no339_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:56 2005CHROMAT_FILE: MSMg01no339_c15.g1 PHD_FILE: MSMg01no339_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,047,867 - 38,048,409)(37,872,158 - 37,872,697)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTACTATTCTCACCTCTCAGAACCAACTAGCTACTGTAAGAACAT
TCATAGAATGTTCTTGTTGGATGGAGTGTTCAACTGACAACCCTCATCCC
TCTGAGGAAGGGGCATGAACAGGTGTCATCCTCATCTCCATGATAACGCT
GTGGGGCAGGGACCGATCAGGGCTTCACTTTACAGTAAGGACTTTGAGGC
TCAGAGGGGCCAGGTAGCTTGTCCATAAACACTTGGTGATTACAGACCCA
GCTGGGATCACATACTTCATGGAAACCCCATACTTCTCCATTGGTCAAAT
GCATCAGACTTTCACATTAGGGCGACATGCTAGGTAGAGGAGAGACTCTT
GTTTTGTGACTACCTCACAACTAAGAGCTGCAGCTGAGGTCTGAGGACAA
AATATCCCCTTCTTTAATGTAAAAGTTTCAAGGCATTGGGGATCCCCAGG
TCATCTACAGCAAGAGATTCCAGGGCCCCAGGGACCCTTCGGAGTATGGA
TTTAGCCCTCGTTCAATGGCTTTAGTATCCACTCTGGCCTATTGACTCTA
GAGCTGGATGTCTGCTGGTCGAGCCACTACAGCATCACCTGTGGTCTCTA
TGAATGTGGGCATTCCTGCCCTTTGCTGCCCCCTTCCAGGCATGTGTGAG
GATGAGGATGCACAGAGGGTCCCCACTTTC

NTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTTATCTTGCTTGGTA
AGTCACCAGCTCCTTGTTCGTGGTCTGAGTGGATAACTAGTTGCCTCACT
TTGGGTCATATGTGCTGTACTATTACAAAAGATGCTGGAAAATTAATTAT
TTAGCTTTTGAGAGCAAGAGACTAAATACCCTTTGTTTCAAGGCTCATAT
GGGAGAGGTAAGATTCCCAAAAGTAGAGAAGAAAATTACATCATAGAATA
TCCAGAAGCCATCAAATGTCTACCACAGTGAGAATTCTGAACTGGTCATC
TACCTCAGACTTACCTGTCCTTCCTTCTCAGACCTTTCACAAGGTATACA
AAGTCCAATCTGCATCTCCCAGTTGATTGACACCAGACCAAACCCCTTCC
CTCAGCAGGAATTTACTTGGTTTTATCTCCATACCTAAAATTATAAGTAA
CAAAATACATGCTAATCTAATCCAACACTGGCCTCCTTGGTGCTAGGTAA
AGGAGAAGGCTGGAGGCTGGGGATCTCCGAGAGGTCAGTCTTTGAATCTA
ACAGTATCATGGAGTACATGGGTGGAAAGAATACTTGAGGTGGTCCCACC
TAGCTCTTCGCCTCTGGAGACAAGAATGTGTGTAAGATTCCCTTCATGCC
CCAGGCAGATCTTTTCATTCAGGTTAATGGGCAGGCTGTTAAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_c15.b1 MSMg01no339_c15.b1 CHROMAT_FILE:
MSMg01no339_c15.b1 PHD_FILE: MSMg01no339_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:56 2005
         (599 letters)



>mm_chr19_38047411_38048409
          Length = 999

 Score =  942 bits (487), Expect = 0.0
 Identities = 529/543 (97%)
 Strand = Plus / Minus

                                                                       
Query: 57  catagaatgttcttgttggatggagtgttcaactgacaaccctcatccctctgaggaagg 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 catagaatgttcttgttggatggagtgttcaactgacaaccctcatccctctgaggaagg 940

                                                                       
Query: 117 ggcatgaacaggtgtcatcctcatctccatgataacgctgtggggcagggaccgatcagg 176
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||  
Sbjct: 939 ggcatgaacaggtgtcatcctcatctccatggtaacgctgtggggcagggactgatcaca 880

                                                                       
Query: 177 gcttcactttacagtaaggactttgaggctcagaggggccaggtagcttgtccataaaca 236
           |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 879 gcttcactttacagtaaggactttgaggctcagaggggcctggtagcttgcccataaaca 820

                                                                       
Query: 237 cttggtgattacagacccagctgggatcacatacttcatggaaaccccatacttctccat 296
           ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 819 cttggtgattacagacccagctgggctcacatacttcatggaaaccccatatttctccat 760

                                                                       
Query: 297 tggtcaaatgcatcagactttcacattagggcgacatgctaggtagaggagagactcttg 356
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 759 tggtcaaatgcatccgactttcacgttagggcgacatgctaggtagaggagagactcttg 700

                                                                       
Query: 357 ttttgtgactacctcacaactaagagctgcagctgaggtctgaggacaaaatatcccctt 416
           |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 699 ttttgtgattacctcacaactaagagctgcagctgaggtctgaggacaaaatgtcccctt 640

                                                                       
Query: 417 ctttaatgtaaaagtttcaaggcattggggatccccaggtcatctacagcaagagattcc 476
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 639 ctttaatgtaaaagtttcaaggcattggggatccccaggtaatctacagcaagagattcc 580

                                                                       
Query: 477 agggccccagggacccttcggagtatggatttagccctcgttcaatggctttagtatcca 536
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 579 agggccccagggacccttcggagtatggatttagccctcgtttaatggctttagtatcca 520

                                                                       
Query: 537 ctctggcctattgactctagagctggatgtctgctggtcgagccactacagcatcacctg 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctctggcctattgactctagagctggatgtctgctggtcgagccactacagcatcacctg 460

              
Query: 597 tgg 599
           |||
Sbjct: 459 tgg 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no339_c15.g1 MSMg01no339_c15.g1 CHROMAT_FILE:
MSMg01no339_c15.g1 PHD_FILE: MSMg01no339_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:56 2005
         (540 letters)



>mm_chr19_37871958_37872897
          Length = 940

 Score = 1013 bits (524), Expect = 0.0
 Identities = 536/540 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctccttatcttgcttggtaagtcaccagctccttgttcgtggtctgagtggataactag 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tctccttatcttgcttggtaagtcaccagctccttgtttgtggtctgagtggataactag 260

                                                                       
Query: 61  ttgcctcactttgggtcatatgtgctgtactattacaaaagatgctggaaaattaattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcctcactttgggtcatatgtgctgtactattacaaaagatgctggaaaattaattat 320

                                                                       
Query: 121 ttagcttttgagagcaagagactaaataccctttgtttcaaggctcatatgggagaggta 180
           |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagctttcgagagaaagagactaaataccctttgtttcaaggctcatatgggagaggta 380

                                                                       
Query: 181 agattcccaaaagtagagaagaaaattacatcatagaatatccagaagccatcaaatgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattcccaaaagtagagaagaaaattacatcatagaatatccagaagccatcaaatgtc 440

                                                                       
Query: 241 taccacagtgagaattctgaactggtcatctacctcagacttacctgtccttccttctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taccacagtgagaattctgaactggtcatctacctcagacttacctgtccttccttctca 500

                                                                       
Query: 301 gacctttcacaaggtatacaaagtccaatctgcatctcccagttgattgacaccagacca 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacctttcataaggtatacaaagtccaatctgcatctcccagttgattgacaccagacca 560

                                                                       
Query: 361 aaccccttccctcagcaggaatttacttggttttatctccatacctaaaattataagtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccccttccctcagcaggaatttacttggttttatctccatacctaaaattataagtaa 620

                                                                       
Query: 421 caaaatacatgctaatctaatccaacactggcctccttggtgctaggtaaaggagaaggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaaatacatgctaatctaatccaacactggcctccttggtgctaggtaaaggagaaggc 680

                                                                       
Query: 481 tggaggctggggatctccgagaggtcagtctttgaatctaacagtatcatggagtacatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggaggctggggatctccgagaggtcagtctttgaatctaacagtatcatggagtacatg 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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