Query= MSMg01no339_c20.b1 MSMg01no339_c20.b1 CHROMAT_FILE:
MSMg01no339_c20.b1 PHD_FILE: MSMg01no339_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:57 2005
(487 letters)
>mm_chr19_45274676_45275562
Length = 887
Score = 603 bits (312), Expect = e-177
Identities = 354/368 (96%)
Strand = Plus / Minus
Query: 5 gaattcataaactgtacgagaagattgacggaccctcccaggaaggaataaagaagtgaa 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gaattcataaactgcaagagaagattgacggaccctcccaggaaggaataaagaagtgaa 309
Query: 65 aatataagggtgaaattaataagcatggaagatatgtgtctaaactagaagttgcagagg 124
|||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 308 aatataagagtgaaattaataagcacggaagatatgtgtctaaactagaagtcgcagagg 249
Query: 125 aggaaaggaataatttggccggggagagagtgggagaatgctgaggggtggagaggtcgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aggaaaggaataatttggccggggagagagtgggagaatgctgaggggtggagaggtcgc 189
Query: 185 tcagtggccaggtgtgcttattgcgcttgcacttgtgcttgctctcccagctcagcacaa 244
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 188 tcagtggccaggtgtgcttactgcgcttgcgcttgtgcttgctctcccagctcagcacaa 129
Query: 245 agtcatgctctcaatgactgaacttcaggggatctggtgtctatggcctctagggcacct 304
|| |||||||||| ||||| ||||||||||||||||||| || |||||||||||||||||
Sbjct: 128 agccatgctctcagtgactaaacttcaggggatctggtgcctgtggcctctagggcacct 69
Query: 305 gcacgcatgcatatatcacccttgagccctcccatatacatagttaaaagtaaatctaca 364
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gcgcgcatgcatacatcacccttgagccctcccatatacatagttaaaagtaaatctaca 9
Query: 365 gagaaaga 372
||||||||
Sbjct: 8 gagaaaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_c20.g1 MSMg01no339_c20.g1 CHROMAT_FILE:
MSMg01no339_c20.g1 PHD_FILE: MSMg01no339_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:57 2005
(225 letters)
>mm_chr19_45122284_45122908
Length = 625
Score = 404 bits (209), Expect = e-117
Identities = 223/235 (94%), Gaps = 12/235 (5%)
Strand = Plus / Plus
Query: 1 catattgcgtggtctgttaggatctgtagggcacaaggaggggttggttgaggctgtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catattgcgtggtctgttaggatctgtagggcacaaggaggggttggttgaggctgtgtg 260
Query: 61 ttaggcatgctttcaaatgtctgcaactgatagatatggctgagcgtgtgtgtgtgtgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaggcatgctttcaaatgtctgcaactgatagatatggctgagcgtgtgtgtgtgtgtg 320
Query: 121 tgtgtgtgtgtgtgt------------aacggtactctggttggttgactagtgtataca 168
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtgtgtgtgtgtgtgtgtgtgtgtaacggtactctggttggttgactagtgtataca 380
Query: 169 gtgtgactctaacctgtttgtgtgctggggagggcgtgcctgtctttgtgtataa 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgactctaacctgtttgtgtgctggggagggcgtgcctgtctttgtgtataa 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space: 133056
Effective search space used: 133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
