Query= MSMg01no340_a07.b1 MSMg01no340_a07.b1 CHROMAT_FILE:
MSMg01no340_a07.b1 PHD_FILE: MSMg01no340_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:58 2005
(576 letters)
>mm_chr19_53565312_53566288
Length = 977
Score = 984 bits (509), Expect = 0.0
Identities = 562/589 (95%), Gaps = 18/589 (3%)
Strand = Plus / Plus
Query: 5 gaattctcatccagtcatctgcctggactctactgcctgtgtatctgactcgtgcttggt 64
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattctcatccagtcatctgcctggactctactgcctgtgtatatgactcgtgcttggt 264
Query: 65 gtgtttgtctgagtgtctgctgtgcgtgagtcacatccctgtgcacatatgaacgtggct 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 gtgtttgtttgagtgtctgctgtgcgtgagtcacatccctgtgcacatatgaatgtggct 324
Query: 125 cgtgtatctgctggggtggacatttgacggagcaagtccacaaatgtgacctctcagcag 184
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 cgtgtatctgctggcgtggacatttgatggagcaagtccacaaatgtgacctctcagcag 384
Query: 185 gctagcaggcttcttgcagagggctctgtgtgctctgtgaacccctgcctcagagtctgt 244
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctagcaggcttcttacagagggctctgtgtgctctgtgaacccctgcctcagagtctgt 444
Query: 245 acttgccgatgctcagggctctgctggtttcttggtgcctcggcctggagtctagagaga 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acttgccgatgctcagggctctgctggtttcttggtgcctcggcctggagtctagagagg 504
Query: 305 atctgggactcaggcagcctcagcagaagcaactcatgacttgctaattggtccctttgc 364
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 atctgggactcaggcagcctcagcaggagcaactcatgacttgctaattggtccctttgc 564
Query: 365 actgctctggggcaccatcaccttggtgctgtggtgactgttcctcaccatgccctctct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actgctctggggcaccatcaccttggtgctgtggtgactgttcctcaccatgccctctct 624
Query: 425 gcctatgttgtaatgggtacaggagtgttctgtcaactctggaggccaccctgtctacct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcctatgttgtaatgggtacaggagtgttctgtcaactctggaggccaccctgtctacct 684
Query: 485 gcagcccagtcaatgaagctcagccagcc-gccccc---------cccca-------ggc 527
||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 685 gcagcccagtcaatgaagctcagccagcctgccccctccctgcccccccaccccccgggc 744
Query: 528 agtagtcccttcttttgggggcttccctgacctggtggagaggaaagac 576
||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 745 agtagtcccttctgttgggg-cttccctgacctggtggagaggaaagac 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 977
Length adjustment: 10
Effective length of query: 566
Effective length of database: 967
Effective search space: 547322
Effective search space used: 547322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_a07.g1 MSMg01no340_a07.g1 CHROMAT_FILE:
MSMg01no340_a07.g1 PHD_FILE: MSMg01no340_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:58 2005
(555 letters)
>mm_chr19_53744147_53745100
Length = 954
Score = 994 bits (514), Expect = 0.0
Identities = 547/562 (97%), Gaps = 8/562 (1%)
Strand = Plus / Minus
Query: 1 aaagtcattcttggctactcagggagtttgaggcaaacatgggtcacatgagaccccatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 aaagtcattcttggctactcagggagtttgaggcaaacatgggtcacatgagaccccatg 723
Query: 61 tcaggaaaatgataagaacacagtggggttactataagagttaaatgaaaaaaacaggcc 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 722 tcaggaaaatgataagaacacagtggggttactataagagttaaatg-aaaaaacaggcc 664
Query: 121 aatgccgtccagcttctggtaggacttgctaagccactgtgggttggcttcgcctgagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aatgccgtccagcttctggtaggacttgctaagccactgtgggttggcttcgcctgagag 604
Query: 181 aaggttggtaatcgccatgcaatctttctctgggccagtatgtcaccaccctctgcatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aaggttggtaatcgccatgcaatctttctctgggccagtatgtcaccaccctctgcatgt 544
Query: 241 acaagtcctgggtgaaacgatgccatcacagaaacaagcaaaagagtgatgggggcactg 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 543 acaagtcctgggtgaaacgatgtcatcacagaaacaagcaaaagagtgatgggggcactg 484
Query: 301 tcagggggactgaagaattcacagagcttggggcctgcttctgctccttgctatctagtt 360
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 483 tcagagggactgaagaattcacagagcttggggcctgcttctgctccttgctatctagct 424
Query: 361 accaacagcatcttacccagactctcagtacttctcggctttcctcctgcgctgtggctc 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 423 accaacagcatcttacccagactctcagtacttctcggctttcctccggcgctgtggctc 364
Query: 421 aggatcacctcacagtgcacgtggctgtggtaatgatgttctgtttgctctcacatcatc 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 363 aggatcacctcacagtgcacgtggctgtggtaatgatgttctgtttgctcgcacatcatc 304
Query: 481 ctgcagccagcaaggccacagcaggagagcaaag-------ctctggggttccctttgct 533
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 303 ctgcagccagcaaggccacagcaggagagcaaagggtgaaactctggggtcccctttgct 244
Query: 534 ttcggggtgggggacgactcag 555
||||||||||||||| ||||||
Sbjct: 243 ttcggggtgggggacaactcag 222
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 954
Length adjustment: 10
Effective length of query: 545
Effective length of database: 944
Effective search space: 514480
Effective search space used: 514480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
