Query= MSMg01no340_j18.b1 MSMg01no340_j18.b1 CHROMAT_FILE:
MSMg01no340_j18.b1 PHD_FILE: MSMg01no340_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:39 2005
(606 letters)
>mm_chr19_34301866_34302871
Length = 1006
Score = 1133 bits (586), Expect = 0.0
Identities = 598/602 (99%)
Strand = Plus / Plus
Query: 5 gaattcaggagatttacacatagctcttcaatgctttactgttggagccatctttctagt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggagatttaaacatagctcttcaatgctttactgttggagccatctttctagt 264
Query: 65 attcacgacaccgccgccccccccccccccttttccttgtttggacaaaggctttcatgt 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 attcacgacaccgccgccccccccccccccttttgcttgtttggacaaaggctttcatgt 324
Query: 125 agcccagactggaaaacaccgtgtatctggggaaggatgaagttaaatccctggtcctcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcccagactggaaaacaccgtgtatctggggaaggatgaagttaaatccctggtcctcc 384
Query: 185 tggctctccagaatcttcagcactacaagtgcatgccagtgtgtgtgtggcaaagccttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggctctccagaatcttcagcactacaagtgcatgccagtgtgtgtgtggcaaagccttt 444
Query: 245 gacttttaaaaattccaaatacatgaaatacgtgtttttctgtatttttttattttattt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gacttttaaaaattccaaatacatgaaatacgtgtttttctgtatttttttattttattt 504
Query: 305 atgattacagtagttcaggtggaggtggttattctgaaaacattcaaatgaaacgaataa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgattacagtagttcaggtggaggtggttattctgaaaacattcaaatgaaacgaataa 564
Query: 365 aatatttttaaaaaccacttttagtgattccatcaagaacaaagaagaaggatttaccga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 aatatttttaaaaaccacttttagtgattccatcaagaacaaagaagaaggatttacggg 624
Query: 425 ttatttaatttctaaggtaatagcttgacagattaacttggaaatctagagaatgggtga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttatttaatttctaaggtaatagcttgacagattaacttggaaatctagagaatgggtga 684
Query: 485 ctgccttcatcctacctgggaaaaatcaactgttagcaggaagttgaaaaataaataagg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgccttcatcctacctgggaaaaatcaactgttagcaggaagttgaaaaataaataagg 744
Query: 545 aactgaggattgcctactacagtctatgaccaaaatgctctaacggctttatagtttctt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aactgaggattgcctactacagtctatgaccaaaatgctctaacggctttatagtttctt 804
Query: 605 gt 606
||
Sbjct: 805 gt 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_j18.g1 MSMg01no340_j18.g1 CHROMAT_FILE:
MSMg01no340_j18.g1 PHD_FILE: MSMg01no340_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:39 2005
(532 letters)
>mm_chr19_34450376_34451309
Length = 934
Score = 980 bits (507), Expect = 0.0
Identities = 527/535 (98%), Gaps = 4/535 (0%)
Strand = Plus / Minus
Query: 1 tcattgggaactttggagattgcgttaagctaaaagttgggtttacgagtaaggtccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tcattgggaactttggagattgcgttaagctaaaagttgggtttacgagtaaggtccttt 675
Query: 61 tccttgagaatcttgactctttttttaggagtgaaattttccatttactaaaaaataagt 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tccttgagaatcttgact-tttttttaggagtgaaattttccatttactaaaaaataagt 616
Query: 121 agattagattagtatgctca---aatgtttgcacaattccacacttaaaggagaaatgga 177
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 615 agattagattagtatgctcaaataatgtttgcacaattccacacttagaggagaaatgga 556
Query: 178 aaatacactaaatcttcccagtattttcttggcatagaggcaacaatgcagatttgttta 237
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 555 aaatacactaaatcttcccagtattttcttggcatagaggcaacaatgtagatttgttta 496
Query: 238 agaatctgaatgatcagagttttctaactcaaaaataatcaaattgagacaaccctgtcc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agaatctgaatgatcagagttttctaactcaaaaataatcaaattgagacaaccctgtcc 436
Query: 298 ttccaatacaacatcaggagactaaggataagggacaaaatttggtgccagatttttgtg 357
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 435 ttccaatacaacatcaggagactaaggataagggacaaaatttggtgccagacttttgtg 376
Query: 358 gataatggtgtggatagtggaggaagaagaagtgaaggtagggcaggtgagactggaagt 417
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 375 gataatggtgtggatagtggagaaagaagaagtgaaggtagggcaggtgagactggaagt 316
Query: 418 ttgatatataacatcttagatttcctatagtagctctttcaagccacacacatttttagg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttgatatataacatcttagatttcctatagtagctctttcaagccacacacatttttagg 256
Query: 478 aagatactttctattctgcttgtactctgtgcagtgcccatggtctgccttttgt 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aagatactttctattctgcttgtactctgtgcagtgcccatggtctgccttttgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 934
Length adjustment: 10
Effective length of query: 522
Effective length of database: 924
Effective search space: 482328
Effective search space used: 482328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
