Query= MSMg01no341_a02.b1 MSMg01no341_a02.b1 CHROMAT_FILE:
MSMg01no341_a02.b1 PHD_FILE: MSMg01no341_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:08 2005
(466 letters)
>mm_chr19_41277182_41278047
Length = 866
Score = 870 bits (450), Expect = 0.0
Identities = 459/462 (99%)
Strand = Plus / Plus
Query: 5 gaattcttccttccctgccttacattccatgctccctccctgctgttccttggttcaccc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccttccctgccttacattccatgctccctccctgctgttccttggttcaccc 264
Query: 65 tccaaatacccagtggccctgctcctggttacattataaggcaaaagattttgctcccac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccaaatacccagtggccctgctcctggttacattataaggcaaaagattttgctcccac 324
Query: 125 ctccattttgcagatagggagactgacacataggtaagtggcaccgtgtgttatcagcca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctccattttgcagatagggagactgacacataggtaagtggcaccgtgtgttatcagcca 384
Query: 185 catagacaggaggggcagggatgaaatgagaaggcagcccctggcttcactcggctgagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catagacaggaggggcagggatgaaatgagaaggcagcccctggcttcactcggctgagg 444
Query: 245 atgagaggatgagggcaggcagacagggagagcattgccagcatggagatgcagaaaatg 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 atgagaggatgagggcaggcagacagggagagcattgccagcatggaggtgcagaaaatg 504
Query: 305 ttggagttcttgcacagtgcctggctatgtgggcagtatctaaggaaaagccagtataga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttggagttcttgcacagtgcctggctatgtgggcagtatctaaggaaaagccagtataga 564
Query: 365 cctatggaccaacagacacagtgcctagaagtccatggctgttccccatctgcatgccag 424
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 cctatggaccaacagacacagtgcctagaagcccatggctgttccccatctgcatgccag 624
Query: 425 gaaggttctcactcccccatcatctgacttaataaccaccct 466
|||||||| |||||||||||||||||||||||||||||||||
Sbjct: 625 gaaggttcccactcccccatcatctgacttaataaccaccct 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_a02.g1 MSMg01no341_a02.g1 CHROMAT_FILE:
MSMg01no341_a02.g1 PHD_FILE: MSMg01no341_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:08 2005
(506 letters)
>mm_chr19_41460528_41461433
Length = 906
Score = 762 bits (394), Expect = 0.0
Identities = 444/466 (95%), Gaps = 10/466 (2%)
Strand = Plus / Minus
Query: 41 ccacctatccccatttcctgctcatattctgctgctccagcctggactcctgcatattgg 100
||||| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 906 ccacccat-cccatttcctgctcatattccgctgctccagcctgggctcctgcatattgg 848
Query: 101 ttacattgtcagcagtggcttgtccttttgcctggtgacattctccccagggcctcacag 160
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 847 ttacagtgtcagcagtggcttgtccttctgcctggtgacattctccccagggcctcacag 788
Query: 161 tgatcctcaaatactaacagccttgcctccaaggcccccgtgcctggtcctcccagacat 220
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 787 tgatcctcaaatactaacagccttgcctccaaggcccccatgcctggtcctcccaaacat 728
Query: 221 tgggttcctgttcctactcagccttcccttcaaagatgcagaagcacccgtggtcttgcg 280
||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 727 tgggttcctgttcctactcag---------caaagatgcagaagcacccgtggtcttgcg 677
Query: 281 tgggcgtttccatggctctgcccttgctctggttctgtctctttaccccctcgccccacc 340
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 676 tgggcgtctccatggctctgcccttgctctggttctgtctctttacccccttgccccacc 617
Query: 341 cactactgctgcctcaactccaaggatggcatccatgacaaggttctcaacccccaaccc 400
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 616 cactactgctgcctcaactccaacgatggcatccatgacaaggttctcaacccccaaccc 557
Query: 401 tttgcatccttgcccttctgccgtgacagggctccccatcacacagacacttcaagctca 460
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 556 tttgcatccttgcccttctgccatgacagggctccccatcacacagacacttcaagctca 497
Query: 461 ggatctctaaactttaaatcctcccattagcattgctctctaatgg 506
||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 496 ggatctctaaactttaaatcctcccgttagcattgctctctaatgg 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
