BAC Information

Click to search

BAC

Clone NameMSMg01-341E07
Chromosome19 (Build37)
Map Location 46,474,830 - 46,645,414
singlet/doubletdoublet
Overlap geneSufu, Trim8, Arl3
Upstream geneBtrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a
Downstream geneSfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a, Obfc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341E07.T7 (MSMg01no341_e07.b1)MSMg01-341E07.TJ (MSMg01no341_e07.g1)
ACCAG455105AG455106
length749767
length of high quality
(start - end)		470 (42 - 511)466 (77 - 542)
definitionCHROMAT_FILE: MSMg01no341_e07.b1 PHD_FILE: MSMg01no341_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:28 2005CHROMAT_FILE: MSMg01no341_e07.g1 PHD_FILE: MSMg01no341_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,474,830 - 46,475,293)(46,644,985 - 46,645,414)
sequence
AGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATCTTCTTCTACTTCTCTGCTGGATTTATGGGGAAATTTAATGTGATC
CTTAGGAGCCTCAAATCGTGAGATGTCCCAGCTCTTCCTTTGAGCCCAGT
GCCTCCCGGCTTACTCTTTAGAATGTAGGTGCTCATGGGGCTCAGCCTGG
CTCTCGCTGCAGTGCTCTGTGCAGAGTTGATTGAGCCAATGTTTGGCCTT
CGTCACTTGCAGCGACTAAGTTTTGATCTGTGGCGTATAGGCCACGATCT
GTGCAGACTGGCAGCTTTATGTATATCCAGACGAAACAATGATAGAAGGC
ACAGTACAGTTTTTTAGAAACTAGCTGTCTAAGAGTCAGGTGCAGAGTGG
AACCTGAACTTTCAGGAATGATATCCACTGGGCATGCTCTGGACAGTCAT
TCAACAGGAGCTACTGATTGACTGATGTCCCTTACCTTGAAGCCTGGCAT
GTTGACATANAGAGATTCACTCCATTTGGAGTCAGAACTTGAAACAGGCA
AAGCAATACGGGCACCACCCCCTCCATTTTCCTTCTAAAAAAATCCGGCC
GGTTGGAGGGAAAAAAAGAAACACTTTGCACCGGCGAGCCATCCTTCACC
TCCGGTGCTTTTCCCTGGGTCCATTTTTAAAAAAACCTTTTGGCCGCCCT
TTATGGAGTTCCATCTATCATCCCTATAACGGGATTCTTTTGCTCCGGA

CAAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGACCAGCCTGGGCTACATAAGA
CTCTGTCTCATAATAAGTGGGTAGTTTTTAAATTAATGAAAATAATTAGA
ACTGCAATTAAAAAGCCTTGCCAGGCTGTGTGTGGTGGCTCATGCCTGTA
ATCCCAGTCTTCTCAATTCGAAATTAAGAGGATCACTATGAGTTAAGAGC
CAACCTGGGCTACAGTTAGTTCCAGGTCAGCCTCAGCCAGAGGGAGGGAG
ATCCTGCCCCAACAGCCACCCCCTTAAAAGAAAGAACCACATGCCAAACC
AAGAGGAAATAACTAGTTATAAATGAGAAATGTGAGAGTTAACTAACTTT
CTTCAGTTTATCAATTGAGTACAGTACATAATTTTATTATTGCTTAATTT
ATAACTAAGTCACAGTAAATGAACCACTGCTCATGTTTCTAGGTGCAAAT
TGGCACTGTATTTAAGTAGATAACAAATTGACCATATTTATACAAGAGAG
TTGGATACCACTACAGGAGTCACGGTATTTTATGCTCACAACAGAGTTTA
ATATATTTACTCATATATATGCCTATATGGGGAAAAATATATGTATACAA
ACAGGTCGGGCCGCCGCCTCCCCGGTTCGGCTGTTTAATCCCCCTTTTTT
CCTCCACTTTACCCCTCGTTTCTCCCCTAATATTCGCATCCCGTAAAACC
ATACAAGCGCTTTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_e07.b1 MSMg01no341_e07.b1 CHROMAT_FILE:
MSMg01no341_e07.b1 PHD_FILE: MSMg01no341_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:28 2005
         (470 letters)



>mm_chr19_46474626_46475495
          Length = 870

 Score =  882 bits (456), Expect = 0.0
 Identities = 462/464 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatcttcttctacttctctgctggatttatggggaaatttaatgtgatccttag 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatcttcaactacttctctgctggatttatggggaaatttaatgtgatccttag 264

                                                                       
Query: 65  gagcctcaaatcgtgagatgtcccagctcttcctttgagcccagtgcctcccggcttact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagcctcaaatcgtgagatgtcccagctcttcctttgagcccagtgcctcccggcttact 324

                                                                       
Query: 125 ctttagaatgtaggtgctcatggggctcagcctggctctcgctgcagtgctctgtgcaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttagaatgtaggtgctcatggggctcagcctggctctcgctgcagtgctctgtgcaga 384

                                                                       
Query: 185 gttgattgagccaatgtttggccttcgtcacttgcagcgactaagttttgatctgtggcg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttgattgagccaatgtttggccttcgtcacttgcagcgactaagttttgatctgtggcg 444

                                                                       
Query: 245 tataggccacgatctgtgcagactggcagctttatgtatatccagacgaaacaatgatag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tataggccacgatctgtgcagactggcagctttatgtatatccagacgaaacaatgatag 504

                                                                       
Query: 305 aaggcacagtacagttttttagaaactagctgtctaagagtcaggtgcagagtggaacct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaggcacagtacagttttttagaaactagctgtctaagagtcaggtgcagagtggaacct 564

                                                                       
Query: 365 gaactttcaggaatgatatccactgggcatgctctggacagtcattcaacaggagctact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaactttcaggaatgatatccactgggcatgctctggacagtcattcaacaggagctact 624

                                                       
Query: 425 gattgactgatgtcccttaccttgaagcctggcatgttgacata 468
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gattgactgatgtcccttaccttgaagcctggcatgttgacata 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_e07.g1 MSMg01no341_e07.g1 CHROMAT_FILE:
MSMg01no341_e07.g1 PHD_FILE: MSMg01no341_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:28 2005
         (466 letters)



>mm_chr19_46644549_46645414
          Length = 866

 Score =  793 bits (410), Expect = 0.0
 Identities = 425/430 (98%)
 Strand = Plus / Minus

                                                                       
Query: 37  ataagtgggtagtttttaaattaatgaaaataattagaactgcaattaaaaagccttgcc 96
           |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 866 ataagtgggtagtttttaaattaatgaaaataattagaaccgcaatttaaaagccttgcc 807

                                                                       
Query: 97  aggctgtgtgtggtggctcatgcctgtaatcccagtcttctcaattcgaaattaagagga 156
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 806 aggctgtgtgtggtggctcatgcctgcaatcccagtcttctcaatgcgaaattaagagga 747

                                                                       
Query: 157 tcactatgagttaagagccaacctgggctacagttagttccaggtcagcctcagccagag 216
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tcactaagagttaagagccaacctgggctacagttagttccaggtcagcctcagccagag 687

                                                                       
Query: 217 ggagggagatcctgccccaacagccacccccttaaaagaaagaaccacatgccaaaccaa 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ggagggagatcctgccccaacagccacccccttaaaagaaagaaccacatgccaaaccaa 627

                                                                       
Query: 277 gaggaaataactagttataaatgagaaatgtgagagttaactaactttcttcagtttatc 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gaggaaataactagttataaatgagaaatgtgagagttaactaactttcttcagtttatc 567

                                                                       
Query: 337 aattgagtacagtacataattttattattgcttaatttataactaagtcacagtaaatga 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aattgagtacagtacataattttattattgcttaatttataactaagtcacagtaaatga 507

                                                                       
Query: 397 accactgctcatgtttctaggtgcaaattggcactgtatttaagtagataacaaattgac 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 accactgctcatgtttctaggtgcaaattggcactgtatttaagtagataacaaattgac 447

                     
Query: 457 catatttata 466
           ||||||||||
Sbjct: 446 catatttata 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |