BAC Information

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BAC

Clone NameMSMg01-341H17
Chromosome19 (Build37)
Map Location 51,343,387 - 51,557,482
singlet/doubletdoublet
Overlap genenone
Upstream geneSorcs1
Downstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936, Ins1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341H17.T7 (MSMg01no341_h17.b1)MSMg01-341H17.TJ (MSMg01no341_h17.g1)
ACCAG455267AG455268
length756768
length of high quality
(start - end)		531 (41 - 571)496 (69 - 564)
definitionCHROMAT_FILE: MSMg01no341_h17.b1 PHD_FILE: MSMg01no341_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:45 2005CHROMAT_FILE: MSMg01no341_h17.g1 PHD_FILE: MSMg01no341_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,556,955 - 51,557,482)(51,343,387 - 51,343,882)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCATAATTGTTTGTTTCTTGCTCTGGCTGTTGCTACTATTGGTGTTGTTT
TGGATGACAATAATGATGTTGATGATTTTGGATAATTTGGAACAGTGAGA
CAGGATCACCCCTGGAGACTTTTGTCTTGTATTAACTCAGTGACAGTGAA
ATAAAAATAAAATAAAAATACAAAAAAAGTGTCAAATTATCTTTCTTCCA
TGTGACTGAATTATGGATGTCCTATTGCCACACACTGACAAAAGCATGAT
TCAGAATGCAGTGTAGTGAGCCTGGATGTGGGAAAGGAGCTAATACTGAG
AATGGGAAATCTAACTTGTCCTAGGCACTGGTTTTTGCTGTCTGGTGTGG
GGGCTCAGGCAGTTTCTGTACATTATTGATTTGACAAAGGCCTAGCCATC
CACTTAGAAAAGCAATGAATTGTGTGAGACTCTCAGAGGCATTTGAAACA
GAGATCAGCTGTACTTCCACGGCCATTGATTTACCTAGCGAAGCATGAAA
TTTGACTATCCTCTTTTTAAATTCTTTTTACAGCCATGGCTAATTGGACA
TAAGCCATCTAGTCTATCCCCGGTTATGCTTATCACATGACTCAGTGAGT
ATCTGCCCACACAGGAAAATCCCTGCTTTCCCCATACAATAATCTCCGAA
GTTTTTACTTGTTTTATTTTTATACCGCTTCACCCTGCTCCCTTTTTTTC
CTCTTG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTAGACAAGAACAGAGCCTTGATTCATCATGAG
ACTTTATTCTCTGCAGCAGAAAAACGAAAGGAAATGCTACTTCCTGCAAG
TAATTACTTTAGAAAACAAACCCAAATGCAGGAGGATAAAGCAATGGGAT
TCACGCTTCATTTCATTCACTTTGACAGTTGCAGGAATCCAAGTCCAATT
GCATCGCTATTAAAGCCATAGGCACAGGCTGCAAACAAAGAAAAGACATG
TTATTGTCAAAGCAATCCTCATAGCTGCAGAAACATTCTTAAAATTAGAA
AGTCATCCAGTTACCTTCTCTGCTCTTGGCAAATTTTCAGTAAAGCAGAG
GTTTCTAAATAATTTTCCAGAGCCCATTTGGCCATGGAATAACTAAAATC
CCTGTATGCATTTATAGACTCACAAAACCCTGTATTTGCACTGCAAATCC
TTTTCCTATGGTGCTGGTGGTAAGCTTTGTTCTCAGGCAGCTCAAGCTCT
GAGCAGGAAATCCATCCAGTGAGGCCTTCCTTGAAGAGAATGAATACCCC
AAAGCCTTTTCCTTCTCTCATTTTCCCTTGGGTGGGGAAAATTTGACTCC
AGAAACCCTTAAGCTGTCCTGAACAACGGACCGCGAATATAACTAACACA
CCCGATGTATAATTTGCCTCTCAATTCATCCTGCCTTCCCCGATCACCAT
TACAATCTCCTGTACGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_h17.b1 MSMg01no341_h17.b1 CHROMAT_FILE:
MSMg01no341_h17.b1 PHD_FILE: MSMg01no341_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:45 2005
         (531 letters)



>mm_chr19_51556567_51557497
          Length = 931

 Score =  951 bits (492), Expect = 0.0
 Identities = 519/528 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccataattgtttgtttcttgctctggctgttgctactattggtgttgttttgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 ggaattcccataattgtttgtttcttgctctggctgttgctactattggtgttgttttgg 857

                                                                       
Query: 64  atgacaataatgatgttgatgattttggataatttggaacagtgagacaggatcacccct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 atgacaataatgatgttgatgattttggataatttggaacagtgagacaggatcacccct 797

                                                                       
Query: 124 ggagacttttgtcttgtattaactcagtgacagtgaaataaaaataaaataaaaatacaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ggagacttttgtcttgtattaactcagtgacagtgaaataaaaataaaataaaaatacaa 737

                                                                       
Query: 184 aaaaagtgtcaaattatctttcttccatgtgactgaattatggatgtcctattgccacac 243
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 736 aaaaagtgtcaaattatctttcttccatgtgactgaactatggatgtcctattgccacac 677

                                                                       
Query: 244 actgacaaaagcatgattcagaatgcagtgtagtgagcctggatgtgggaaaggagctaa 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 676 actgacaaaagcatgattcagaatgcagtgtagtgagcctggatgtgggaaaggggctaa 617

                                                                       
Query: 304 tactgagaatgggaaatctaacttgtcctaggcactggtttttgctgtctggtgtggggg 363
           ||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||
Sbjct: 616 tactgagaatgggaaatctaacttgtcctaaaaactgatttttgctgtctggtgtggggg 557

                                                                       
Query: 364 ctcaggcagtttctgtacattattgatttgacaaaggcctagccatccacttagaaaagc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctcaggcagtttctgtacattattgatttgacaaaggcctagccatccacttagaaaagc 497

                                                                       
Query: 424 aatgaattgtgtgagactctcagaggcatttgaaacagagatcagctgtacttccacggc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 496 aatgaattgtgtgagactctcagaggcatttgaaacagagatcagctgtacttccacggt 437

                                                           
Query: 484 cattgatttacctagcgaagcatgaaatttgactatcctctttttaaa 531
           ||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 436 cattgatttacctagtgaagcatgaaatttgattatcctctttttaaa 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_h17.g1 MSMg01no341_h17.g1 CHROMAT_FILE:
MSMg01no341_h17.g1 PHD_FILE: MSMg01no341_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:45 2005
         (496 letters)



>mm_chr19_51343187_51344082
          Length = 896

 Score =  928 bits (480), Expect = 0.0
 Identities = 492/496 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagacaagaacagagccttgattcatcatgagactttattctctgcagcagaaaaacgaa 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagataagaacagagccttgattcatcatgagactttattctctgcagcagaaaaacgaa 260

                                                                       
Query: 61  aggaaatgctacttcctgcaagtaattactttagaaaacaaacccaaatgcaggaggata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaatgctacttcctgcaagtaattactttagaaaacaaacccaaatgcaggaggata 320

                                                                       
Query: 121 aagcaatgggattcacgcttcatttcattcactttgacagttgcaggaatccaagtccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcaatgggattcacgcttcatttcattcactttgacagttgcaggaatccaagtccaa 380

                                                                       
Query: 181 ttgcatcgctattaaagccataggcacaggctgcaaacaaagaaaagacatgttattgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcatcgctattaaagccataggcacaggctgcaaacaaagaaaagacatgttattgtc 440

                                                                       
Query: 241 aaagcaatcctcatagctgcagaaacattcttaaaattagaaagtcatccagttaccttc 300
           ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 aaagcaatcctcatagccgcagaaacattcttaaaattagaaagccatccagttaccttc 500

                                                                       
Query: 301 tctgctcttggcaaattttcagtaaagcagaggtttctaaataattttccagagcccatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgctcttggcaaattttcagtaaagcagaggtttctaaataattttccagagcccatt 560

                                                                       
Query: 361 tggccatggaataactaaaatccctgtatgcatttatagactcacaaaaccctgtatttg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 tggccatggaataactaaaatccctgtatgcatttatagactcacaaaacccggtatttg 620

                                                                       
Query: 421 cactgcaaatccttttcctatggtgctggtggtaagctttgttctcaggcagctcaagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactgcaaatccttttcctatggtgctggtggtaagctttgttctcaggcagctcaagct 680

                           
Query: 481 ctgagcaggaaatcca 496
           ||||||||||||||||
Sbjct: 681 ctgagcaggaaatcca 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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