BAC Information

Click to search

BAC

Clone NameMSMg01-341L10
Chromosome19 (Build37)
Map Location 45,022,434 - 45,022,816
singlet/doubletsinglet
Overlap gene6030443O07Rik
Upstream geneCpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752
Downstream geneSema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341L10.T7 (MSMg01no341_l10.b1)MSMg01-341L10.TJ (MSMg01no341_l10.g1)
ACCAG455442AG455443
length832754
length of high quality
(start - end)
39 (63 - 101)384 (74 - 457)
definitionCHROMAT_FILE: MSMg01no341_l10.b1 PHD_FILE: MSMg01no341_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:02 2005CHROMAT_FILE: MSMg01no341_l10.g1 PHD_FILE: MSMg01no341_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:02 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTAAAATTCCGATAGGGGCCTGTAAGGTGGTTAGGTGGGTGGAGGTACCT
GGCTGATGACCTGCCCTCAATCCCCAAATCCTAGTCAAAAAAAGAGACAC
TGTTGTAAAGAGATAACTGACTCAGGTAGCTGCTCCCTCTGACTTCCACA
CTAGCATTCCACACAGGAATAAATAAAAGTAATGATCCTTAAAACAAATG
AGAGGTATGACTTTATCTGCTATTCTATGTAGCCCTTCTAGTGAGGTCTA
CACTTGGATCTTGTTTTGTTTCTGGTAAGATTACTTTTCTCTATTTTGTG
GTTTTTCGTATTACAGTCTAACGTGGGACATCCTCGTTTCCCTTCCGTTT
TCGTTAACCCGCGCCTTATGCTAGTTAGCTTTTATTCCTTTACCTTCCTT
TCCCCCTTTCTACTTCCTCCTTGATTTCTATCCCCCTTTTCCTTTTCCTA
CCTGCCCTATTTCGTCTCCCTCATTCCTTTTCGTTTCTACGCCCCTCCCC
TTTTTTTCCCCCCCTTTTACTTTTTTTCCCTCCCTTCCTGCCCGGCCTTC
CGTACCTTTTCTATACATTTCTTTCCCCATCCCTTTTTTCCGCTTTTCGC
TCCCCTTTTTTCCCCCCTCTCTTTTCATTTTCTTTTCTTTTTTCCACCTC
TTTAGCATCTTTTTATATTTCCCCCTATACCCACACCCCCCTTTCTGTTC
TTTTTTCCCCTCTTATTTATTCCCGCCTTCTTTATTTTTCATTTTCCCAC
TCTTCTTTCATATTCTCCTTCTATTTTGCTTG
AGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCAGGGTTCTTATACAGAA
GAATCCTGTCTCAGAGAGTGTTTTGCGCTTCTTATGGCTACACATTTCAC
ACTTTCAGTAGTGAAAAATCACCGAGTCTCTCAGTGCTAACACTTAGGCT
GTAACTTGGTTTTAATGTTGGCCTTTCAGCAAAACGCAAGTGTATCTCAG
TCACTAAGCAGCCAGCCAAAGGTCAGCTGTTTTATAAAATCAAATTTAAG
AAATGGCAAAACAGTACCAGAAGATTATATAATTTAAAAAGACACTACCT
GTGTTCTTCCAAGAGGCCGTCACCATCATCTGTACTATCCTGATCGCCAG
TTCTGATAGGAGATTTAATGCCACGGCCTTGCCTTATGTCTTCCTGTAGC
TTCTTCTGGAGNTCATCTAGCCTGAAAATTGAAAAGAATGCACAATAAAT
AACCCATATTTATTTATTCCTTCCTTCTTGAGACAGGTTCTCCCCTTACA
GTTCTAAAACTCCCCATATCAATCAGCCTTGGCCTTATTCTTATAATTTT
TTGTTTTTTGCACCTCTGTTTTTAACGCCTGCCTTTTAAGCTTTATCTTT
CACTTATTATATACTCTCCCCCCCTTTCTTACTATATAAACCTTTCACTA
CCATTTTCTACTTCCTTTTTTCCCATTCCTGCCCTATTCCCTCTATACTT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_l10.g1 MSMg01no341_l10.g1 CHROMAT_FILE:
MSMg01no341_l10.g1 PHD_FILE: MSMg01no341_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:02 2005
         (384 letters)



>mm_chr19_45022234_45023016
          Length = 783

 Score =  704 bits (364), Expect = 0.0
 Identities = 379/384 (98%), Gaps = 1/384 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccagccagggttcttatacagaagaatcctgtctcagagagtgttttgcgcttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 caggccagccagggttcttatacagaagaatcctgtctcagagagtgttttgcgcttctt 524

                                                                       
Query: 61  atggctacacatttcacactttcagtagtgaaaaatcaccgagtctctcagtgctaacac 120
           |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 523 atggctacacatttcacactttcagtagtg-aaaatcactgagtctctcagtgctaacac 465

                                                                       
Query: 121 ttaggctgtaacttggttttaatgttggcctttcagcaaaacgcaagtgtatctcagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ttaggctgtaacttggttttaatgttggcctttcagcaaaacgcaagtgtatctcagtca 405

                                                                       
Query: 181 ctaagcagccagccaaaggtcagctgttttataaaatcaaatttaagaaatggcaaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctaagcagccagccaaaggtcagctgttttataaaatcaaatttaagaaatggcaaaaca 345

                                                                       
Query: 241 gtaccagaagattatataatttaaaaagacactacctgtgttcttccaagaggccgtcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 344 gtaccagaagattatataatttaaaaagacactacctgtgttcttccaagaggccatcac 285

                                                                       
Query: 301 catcatctgtactatcctgatcgccagttctgataggagatttaatgccacggccttgcc 360
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 284 catcatctgtactatcctgatcgccagttctgagaggagatttaatgccacggccttgtc 225

                                   
Query: 361 ttatgtcttcctgtagcttcttct 384
           ||||||||||||||||||||||||
Sbjct: 224 ttatgtcttcctgtagcttcttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 783
Length adjustment: 9
Effective length of query: 375
Effective length of database: 774
Effective search space:   290250
Effective search space used:   290250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)