BAC Information

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BAC

Clone NameMSMg01-342F17
Chromosome19 (Build37)
Map Location 10,052,266 - 10,052,714
singlet/doubletsinglet
Overlap genenone
Upstream geneEef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215
Downstream geneFth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342F17.T7 (MSMg01no342_f17.b1)MSMg01-342F17.TJ (MSMg01no342_f17.g1)
ACCAG455929AG455930
length742740
length of high quality
(start - end)
413 (56 - 468)452 (63 - 514)
definitionCHROMAT_FILE: MSMg01no342_f17.b1 PHD_FILE: MSMg01no342_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:51 2005CHROMAT_FILE: MSMg01no342_f17.g1 PHD_FILE: MSMg01no342_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTCACAAGGATGCGCGGAATTCTTTGTTT
CCATCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAATCCAC
CTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCCGATTTGG
AATAGGTAAAGATCCTTTCCCAATCTGATGGTGGTCTTTTTGTCTTATTG
ATGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTT
ATCGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATT
TTTTTTCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATA
AGTTTCAGTGTCACTGGTTTTATGTGGAGATCCTTAATCCACTTAGATTT
GACCTTACTACAAGGAGATAGAAATGGATCAATTCGCATTCTTCTACATG
ATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGCCTTTTTTT
CACTGGATGGGTTTAGCTCCCTTGTCAAAGACCAAGCGGACCAAGGGTGG
GGATTCTATTTTGGCGCCTCCAATTTGTTTTATTCGGCTCCTTTGTTCGT
CCTTTTCTCCTATTTCTTCCGTTTTTCCCCCTTATTTTTCTCCCTCTATC
TATAAGCGGCCTCCTGCTTCCCCCCTTTACTTTTTTTTTTTTTTCCTCAT
TTGTTCTTTTTCTTTTTCCCTCTCCTTTCCTTCTTTATCCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTCGAGGGAAATAGCCATGGACTGAAAATGTGGAGCAG
AGTGTGCAATGGAACGCCAGGGCAACCGTGAAACATCACGTGATCATCAA
TTGTATGGTGCGTGCCAGACTGTGCGTATGGAATAATGTTAACCGAGAAA
GCTGAGTCCAAGATAGTTCCTGCAAGTCAGTTACAGAGAAGGAACATCAC
AGGCCTGGAAACAGATGAAGGCTGGGTGAAAATGAGTAAAGACTCTGAAA
ATGAAACAGCCAGTGGTGTTGCAAAAGGATGGGATTCCCCGAGAAGTGTG
CGGGAAATTCTGATATTTGCAAGTGTACCACTCAACCAGATTGTGGTACA
TTCTAGATGAAGCTACTGTGATTCGGAAATGATCCTTAAATCATTTTTTG
AAAACTCAGAACATGTAGACTTAAAAGTCTAGATACCCAGAATCCCTCAC
TTCTAGACTATTAAAGGTTGAGATTCATAGCCTGGAATGTTAGAGGACAC
TGTAATAAATGGAAGCCCTGTCTCCCCCTTAAATAAATAAATAAAAATTC
AGGTTGGCAAGGTGGGTTTAACAAGCTAAGGTGTTGGCCCCAAACCCGCT
GGTTTAAGTTCATCTCCCCCCCCCTTGGTTATGGAATAACCCTTTATTTG
TGTGTGCCGCCTCTCCTGTTAAAAAAACCATTTAAAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_f17.g1 MSMg01no342_f17.g1 CHROMAT_FILE:
MSMg01no342_f17.g1 PHD_FILE: MSMg01no342_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:51 2005
         (452 letters)



>mm_chr19_10052066_10052914
          Length = 849

 Score =  774 bits (400), Expect = 0.0
 Identities = 438/452 (96%), Gaps = 3/452 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcgagggaaatagccatggactgaaaatgtggagcagagtgtgcaatggaacgccaggg 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 649 ctcgagggaaatagccatggactgaaattgtggagcagagtgtgcaatggaacaccaggg 590

                                                                       
Query: 61  caaccgtgaaacatcacgtgatcatcaattgtatggtgcgtgccagactgtgcgtatgga 120
           ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 589 caaccgtgaaacatcacgtgatcattaattgtatggtgcgtgccagacagtgcgtatgga 530

                                                                       
Query: 121 ataatgttaaccgagaaagctgagtccaagatagttcctgcaagtcagttacagagaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ataatgttaaccgagaaagctgagtccaagatagttcctgcaagtcagttacagagaagg 470

                                                                       
Query: 181 aacatcacaggcctggaaacagatgaaggctgggtgaaaatgagtaaagactctgaaaat 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 469 aacatcacaggcctggaaacagatgaaggctgggtgaaaatgggtaaagactctgaaaat 410

                                                                       
Query: 241 gaaacagccagtggtgttgcaaaaggatgggattccccgagaagtgtgcgggaaattctg 300
           ||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 409 gaaacagcca---gtgttgcaaaaggatgggattccccgagaagtgtgctggaaattctg 353

                                                                       
Query: 301 atatttgcaagtgtaccactcaaccagattgtggtacattctagatgaagctactgtgat 360
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 352 atatttgcaagtgtaccactcaaccagattgtggcacattctagacgaagctactgtgat 293

                                                                       
Query: 361 tcggaaatgatccttaaatcattttttgaaaactcagaacatgtagacttaaaagtctag 420
           ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||
Sbjct: 292 tcggaaatgatccttaaatgatttcttgaaaactcagaccatgtagacttaaaagtctag 233

                                           
Query: 421 atacccagaatccctcacttctagactattaa 452
           ||||||||||||||||||||||||||||||||
Sbjct: 232 atacccagaatccctcacttctagactattaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 849
Length adjustment: 10
Effective length of query: 442
Effective length of database: 839
Effective search space:   370838
Effective search space used:   370838
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)