Query= MSMg01no342_l12.b1 MSMg01no342_l12.b1 CHROMAT_FILE:
MSMg01no342_l12.b1 PHD_FILE: MSMg01no342_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:19 2005
(560 letters)
>mm_chr19_30015302_30016261
Length = 960
Score = 596 bits (308), Expect = e-174
Identities = 329/336 (97%)
Strand = Plus / Minus
Query: 5 gaattccagggtctccgttctagtttatgctgtgtcaagcctttatggtctaacatgaga 64
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaattccagggcctaagttctagtttatgctgtgtcaagcctttatggtctaacatgaga 277
Query: 65 agattcatgagtctgtgatgggaatctcaaagacatattgctagtgcatagaaagaggca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agattcatgagtctgtgatgggaatctcaaagacatattgctagtgcatagaaagaggca 217
Query: 125 gtgtccccaaataatctgctttagttttatttctacaactgtgataaaatacttcaacaa 184
|||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 216 gtgtccccaaatgatctgctttagttttatttctacagctgtgataaaatactccaacaa 157
Query: 185 aaagcaacttgggaaaaggatggttttacttaagttcataatttcaggttatgtaccccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aaagcaacttgggaaaaggatggttttacttaagttcataatttcaggttatgtaccccc 97
Query: 245 atgggggaagtcaagacaggaactttaaacagctgttcacatctcatcgcagtcaagaga 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 gtgggggaagtcaagacaggaactttaaacagctgttcacatctcatcgcagtcaagaga 37
Query: 305 aggaaacaaatgcttacgggctggcttgtttgcatt 340
||||||||||||||||||||||||||||||||||||
Sbjct: 36 aggaaacaaatgcttacgggctggcttgtttgcatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_l12.g1 MSMg01no342_l12.g1 CHROMAT_FILE:
MSMg01no342_l12.g1 PHD_FILE: MSMg01no342_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:19 2005
(492 letters)
>mm_chr19_29847985_29848880
Length = 896
Score = 913 bits (472), Expect = 0.0
Identities = 488/496 (98%), Gaps = 4/496 (0%)
Strand = Plus / Plus
Query: 1 catgttatccaaggctatcttta----gtgagagctggtctcaaacacaaaaaacaaaat 56
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 catgttatccaaggctatctttatctagtgagagctggtctcaaacacaaaaaacaaaat 260
Query: 57 caaacaacattaacaacaaaactcacttaacttgaaaggtatttaaacaaataaacaaca 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaacaacattaacaacaaaactcacttaacttgaaaggtatttaaacaaataaacaaca 320
Query: 117 aaacaatgtcaggtggtggtggcccacacctttaagaccagcacttgggaggcagagtca 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacaatgtcaggtggtggtggcccacacctttaagaccagcacttgggaggcagagtca 380
Query: 177 ggcaaatctctgagttctaggccagcctggactacagagtgagttccaggacagccgggg 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ggcaaatctctgagttctaggccagcctggactacagagtgagttccaggacagccaggg 440
Query: 237 ctacacagagaaaccctgtctgggaatcaaaaccccaagaccaaaaaccaaaaccaaaag 296
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctacacagagaaaccctgtctcggaatcaaaaccccaagaccaaaaaccaaaaccaaaag 500
Query: 297 tcaaaaacaaaattggaacttttactgatgaaaattaaaatgtttcagattaaaaagaaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaaaacaaaattggaacttttactgatgaaaattaaaatgtttcagattaaaaagaaa 560
Query: 357 acacactaaatgggattaaaagcaattagaggtagcaaggaaagaaagatcaatgaagtg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacactaaatgggattaaaagcaattagaggtagcaaggaaagaaagatcaatgaagtg 620
Query: 417 aaacaaatgaagaggaaactactttaatggagtatttaanaaatgaccacagaaagaaat 476
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 aaacaaatgaagaggaaactactttaatggagtatttaaaaaatgaccacagaaagaaat 680
Query: 477 tatacnagaatgctta 492
||||| ||||||||||
Sbjct: 681 tatacaagaatgctta 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 896
Length adjustment: 10
Effective length of query: 482
Effective length of database: 886
Effective search space: 427052
Effective search space used: 427052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
