Query= MSMg01no343_l15.b1 MSMg01no343_l15.b1 CHROMAT_FILE:
MSMg01no343_l15.b1 PHD_FILE: MSMg01no343_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:40 2005
(491 letters)
>mm_chr19_36342158_36343048
Length = 891
Score = 810 bits (419), Expect = 0.0
Identities = 470/487 (96%), Gaps = 1/487 (0%)
Strand = Plus / Plus
Query: 6 gaattctctgacc-atacaacctgcagagagagtgcttctttggcttacaagtcaagtca 64
||||||||||||| | |||||||||| |||||||| |||||||| ||||||| |||||||
Sbjct: 205 gaattctctgaccaagacaacctgcaaagagagtgtttctttggtttacaaggcaagtca 264
Query: 65 aagtctgtcactgaaggaagcctggggagagaccaccaagcctggaggaacagggcttgc 124
|||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 265 aagtctgtcactaaaggaagccaggggagagaccaccgagcctggaggaacagggcttgc 324
Query: 125 tggtttgttcccctcagcttactcagcttgctttcttaaatcatccatagccaccttccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 tggtttgttcccctcagcttactcagcttgctttcttaaatcatccatagctaccttccc 384
Query: 185 aggggtgacaccctgcataatgggctggatcctcccagtaaatcattcatcaagaagatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggggtgacaccctgcataatgggctggatcctcccagtaaatcattcatcaagaagatg 444
Query: 245 ctccacagacttgcctacaggccatccaatggagatctgccaaataaggttctctcctcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctccacagacttgcctacaggccatccaatggagatctgccaaataaggttctctcctcc 504
Query: 305 caggtgactatgatgtgtgtcacacacaatgaacaaacaaacaaatggcaacaaaaaccc 364
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caggtgactataatgtgtgtcacacacaatgaacaaacaaacaaatggcaacaaaaaccc 564
Query: 365 caaacctcctggcacaggcatagtgaactataggagtaggaagaaagtagccaggtcttc 424
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 caaaccccctggcacaggcatagtgaactataggaataggaagaaagtagccaggtcttc 624
Query: 425 ctggaaagttaaagaaagacttcagagaagaccacgtgttgcagacggttgacaagtaaa 484
|||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 625 ctggaaagttaaggaaaggcttcagacaagaccacgtgttgcagacagttgacaagtaaa 684
Query: 485 tgttggg 491
|||||||
Sbjct: 685 tgttggg 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_l15.g1 MSMg01no343_l15.g1 CHROMAT_FILE:
MSMg01no343_l15.g1 PHD_FILE: MSMg01no343_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:40 2005
(410 letters)
>mm_chr19_36504201_36505010
Length = 810
Score = 688 bits (356), Expect = 0.0
Identities = 392/410 (95%), Gaps = 10/410 (2%)
Strand = Plus / Minus
Query: 1 tttaggtttgaacaaggtcaaatataaaaatttacagggagatggctattatgctctcta 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 701 tttaggtttgaacaaggtcaaatataaaaatttacagggagatggttattatgctctcta 642
Query: 61 ataaagattttctaaattgagatgggcagcacaaactggaccagacagtttttaaagaag 120
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 641 ataaagattttctaaattgagatgggcagca----------cagacagtttttaaagaag 592
Query: 121 gtatttacaggttcccttctggactaattcagttgccctaagtctctaactctgcaaagt 180
|||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 591 gtatctacaggttcccttctggactagttcagttgccctaagactctaactctgcaaagt 532
Query: 181 tccctcaccaggggagccagaaggtaactgggaaacactggccaaggtgaggaatggtgg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 531 tccctcaccaggggagccagaaggtaactgggaaacactggccaaggtgaggaatgatgg 472
Query: 241 gcagaagctgctcacaaacatcttcctcaacagaatctgttagagtgccccagactagga 300
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 471 gcagaagctgctcacaaacatcttcctcaacagaatctgttagagcgccctagactagga 412
Query: 301 ttcagctctctgctaaactataatcagaagcacttcattaaccctgaggataaatcactg 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttcggctctctgctaaactataatcagaagcacttcattaaccctgaggataaatcactg 352
Query: 361 gcacaggacaagatagaatcaaacagtataagagttaggtgcaaagcaga 410
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gcacaggacaagatagaatcaaacagtataagagttaggtgcaaagcaga 302
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space: 321201
Effective search space used: 321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
