BAC Information

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BAC

Clone NameMSMg01-345G24
Chromosome19 (Build37)
Map Location 41,208,451 - 41,208,876
singlet/doubletsinglet
Overlap geneTll2
Upstream geneCyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10
Downstream geneTm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345G24.T7 (MSMg01no345_g24.b1)MSMg01-345G24.TJ (MSMg01no345_g24.g1)
ACCAG458261AG458262
length767762
length of high quality
(start - end)		458 (60 - 517)---
definitionCHROMAT_FILE: MSMg01no345_g24.b1 PHD_FILE: MSMg01no345_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:53 2005CHROMAT_FILE: MSMg01no345_g24.g1 PHD_FILE: MSMg01no345_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAAGAAANNNTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTTTGACCTTTCCCAACAGTAGACAACTAACT
ACTTCAGGCAAGAAAAAGCAACAGTGCAGAAACACACAAACTTAGAAAGA
GAGAGAAGAGACATAGTCAGAGAAACAGCAGCAGAATCGTAAATAGTTCC
TGCAACACCGAGGGAAAGAAATATGGCTAACTCCAAGATAAATATGTAGC
ATTGGCACAGACCAATCAATAACTTTGTAGACTTAGATTTTTCTCAACCT
ACTTTAATAAGGGTTCTTAAATGCTTTAACCTGCTGTCTACCCCACCACC
CACCAGAGGCAGTGGGAAGGAAAGGTTAGTAGGGCAAAAGGGGGGATGTG
GGACTATGTAGAAATTGTTCTTTGGGGTGATCCCATTCTTTGTTGTCAGC
ATATCAGCAGTTCAGTTCACATGAGTCAGCAGCAGTAGCTTGATCCACTC
ACCATTCACAAACCTGCAACGGCAGTTCTATCCAGAAGAAACCTCGAGGC
TCTGCCCAGTCACCCAAGTCCGAGGAAGTGGCGAGAAGCCCTTGAACACC
ACCGAAAGTCCTTGTTGGGGTTCTCTCTAGGAATCAGGACAACAAAGATT
ACCCCGAAGGGGAGGGAGAAACATGGCCCCCCGGGTTGGCCACTGCCGGT
GGGACATAATTATTTATCTTTTCCAAAAATCCAAGGGTCCTCAAAAACCG
GGTGGGTCTTGGAAAAA

NNNNAAGACGATGAAGTGACTGAGGCTGAGAGAACGGCTGCTCTTTCTAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTAAGAACTTGTNAA
ATGGGCTCCCATTTGCTAAATGGGAACTTTTTTNCCGTACTCTGGCAAAN
NGGACATGGCTCTCCACTGACTGCACTTGTGGTTGCAGCCCAGACTACCC
CCAAATTTCCAAATCTTTGTCCAATTACTTGTTCAAAGGGGGGGGGGGGG
GGGGGGGGGGGGGGNGNNTTNNNNNNNNNNTTNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTTTTTTTNNTTNNNNNNNNTNNNNNNNNNTNTTTTTTTT
TTTTTNTNTTNTTTTTTTNTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNN
NNNNNNNNNNNNNTNNNNTNNNTNTNTTTTTNNNNNNNNNNNNTTNTTNN
NTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTT
TTTNTNTTTTTTTTTTTTTTTTTTTTTTTNTTTTNTNTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTNTTTTTTTTTTTT
TNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
NCNTTTTTTTTTTTTTTTTTTTTNTNTNNTTTTTTTTTTTTTTNTTTTTT
TTTTTTTTTNTTTTTTTNNTTTTTTTTTTTTTTTTTTGTGGGTTTTGTTG
CGAGTGGTGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_g24.b1 MSMg01no345_g24.b1 CHROMAT_FILE:
MSMg01no345_g24.b1 PHD_FILE: MSMg01no345_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:53 2005
         (458 letters)



>mm_chr19_41208451_41209308
          Length = 858

 Score =  725 bits (375), Expect = 0.0
 Identities = 415/433 (95%), Gaps = 11/433 (2%)
 Strand = Plus / Minus

                                                                       
Query: 24  aacagtagacaactaactacttcaggcaagaaaaagcaacagtgcagaaacacacaaact 83
           ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aacagtagac----aactacttcaggcaagaaaaagcaacagtgcagaaacacacaaact 371

                                                                       
Query: 84  tagaaagagagagaagagacatagtcagagaaacagcagcagaatcgtaaatagttcctg 143
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tagaatgagagagaagagacatagtcagagaaacagcagcagaatcgtaaatagttcctg 311

                                                                       
Query: 144 caacaccgagggaaagaaatatggctaactccaagataaatatgtagcattggcacagac 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 caacaccgagggaaagaaatatggctaactccaagataaatatgtagcattggcacagac 251

                                                                       
Query: 204 caatcaataactttgtagacttagatttttctcaacctactttaataagggt----tctt 259
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||    ||||
Sbjct: 250 caatcaataactttgtagacttagatttttctcaacctactttaataa--gtttactctt 193

                                                                       
Query: 260 aaatgctttaacctgctgtctaccccaccacccaccagaggcagtgggaaggaaaggtta 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 aaatgctttaacctgctgtctaccccaccacccaccagaggcagtgggaaggaaaggtta 133

                                                                       
Query: 320 gtagggcaaaaggggggatgtgggactatgtagaaattgttctttggggtgatcccattc 379
           ||||||||||| |||||| |||||| |||||| |||||||||||||||||||||||||||
Sbjct: 132 gtagggcaaaa-gggggacgtgggaatatgtaaaaattgttctttggggtgatcccattc 74

                                                                       
Query: 380 tttgttgtcagcatatcagcagttcagttcacatgagtcagcagcagtagcttgatccac 439
           |||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 73  tttgttgtcagcatattagctgttcagttcacatgaatcagcagcagtagcttgatccac 14

                        
Query: 440 tcaccattcacaa 452
           |||||||||||||
Sbjct: 13  tcaccattcacaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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