Query= MSMg01no345_n10.b1 MSMg01no345_n10.b1 CHROMAT_FILE:
MSMg01no345_n10.b1 PHD_FILE: MSMg01no345_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:23 2005
(504 letters)
>mm_chr19_32371307_32372210
Length = 904
Score = 915 bits (473), Expect = 0.0
Identities = 491/497 (98%), Gaps = 1/497 (0%)
Strand = Plus / Plus
Query: 8 ttctgatgcctccacttcctttgtactggggtcacagatggacacagatggccacacccg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctgatgcctccacttcctttgtactggggtcacagatggacacagatggccacacccg 267
Query: 68 gcttttctgtgggtgccagagatgtgagctctgcttagcagtctgtctttggatgctatc 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gcttttctgtgggtgccagagatgtgagctctgcttagcagtctgtctttggatgctatc 327
Query: 128 ttctgttcggaatatgactagtagagctctctctcattccgtatgctagccactcagtta 187
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttctgttaggaatatgactagtagagctctctctcattccgtatgctagccactcagtta 387
Query: 188 actgtttctgttgctgcacagaggctcgcaaacttcaggagctcctacttagagggttga 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 actgtttctgttgctgcacagaggctcgcaaacttcaggagctcctacttagagggttga 447
Query: 248 ctttactttccatagcaattcaaggcctattgaggaagcccttacatcagcggttctcaa 307
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 448 ctttactttccatagcaattcaaggcctattgaggaagcccttacatcagcgcttctcaa 507
Query: 308 ccttcctagcgctgcgatcctttaatgcagttcctcaggttgtggtgacccccaatcata 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ccttcctagcgctgcgatcctttaatgcagttcctcaggttgtggtgacccccaatcata 567
Query: 368 aaagcatttttgtggctattttataactataattttgtgactattatgaatcgtaatgta 427
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 568 aaagcatttttgtggctattttataactataattttgtgactattatgaattgtaatgta 627
Query: 428 attacctgtatttttcctatggtcttaagggtcgttgcaatccctagattgagaagcact 487
||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct: 628 attacctgtatttttccta-ggtcttaaggatcgttgcaacccctagattgagaagcact 686
Query: 488 gattttcatgtatccaa 504
|||||||||||||||||
Sbjct: 687 gattttcatgtatccaa 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_n10.g1 MSMg01no345_n10.g1 CHROMAT_FILE:
MSMg01no345_n10.g1 PHD_FILE: MSMg01no345_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:23 2005
(420 letters)
>mm_chr19_32515150_32515969
Length = 820
Score = 789 bits (408), Expect = 0.0
Identities = 417/420 (99%)
Strand = Plus / Minus
Query: 1 cataaaaatactaagccagggagacaagaagcctgcgtctgcacagtgggtatttaggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cataaaaatactaagccagggagacaagaagcctgcgtctgcacagtgggtatttaggct 406
Query: 61 aggaaggaacagattttgggtcccacagcactgcagcaatggcagagtgccctgagcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aggaaggaacagattttgggtcccacagcactgcagcaatggcagagtgccctgagcagc 346
Query: 121 tgtggcagttttctgggacaattcatctcctgatgagagcctaaaaactagatagacttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgtggcagttttctgggacaattcatctcctgatgagagcctaaaaactagatagacttc 286
Query: 181 aagggtcaactggccagtgagggccaagtactcatgggaaatatcaaccagctgttaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aagggtcaactggccagtgagggccaagtactcatgggaaatatcaaccagctgttaaag 226
Query: 241 tctgtccataatgaacacagattctgctgggtagcagtggcccacgcctttgaacctaga 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tctgtccataaagaacacagattctgctgggtagcagtggcccacgcctttgaacctaga 166
Query: 301 gcttggagacagaggcaggcggatctctgtgtgtttcaggcaagcctggttaacagagtg 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gcttggagacagaggcaggtggatctctgtgtgtttcaggcaagcctggttaacagagtg 106
Query: 361 aattctaggacagccagggctacacaacgaaacactgtctcagaaaatcaaaacaaaaca 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 105 aattctaggacagccagggctacacaacgaaacactgtctcggaaaatcaaaacaaaaca 46
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
