Query= MSMg01no345_p06.b1 MSMg01no345_p06.b1 CHROMAT_FILE:
MSMg01no345_p06.b1 PHD_FILE: MSMg01no345_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:31 2005
(529 letters)
>mm_chr19_45267187_45268118
Length = 932
Score = 808 bits (418), Expect = 0.0
Identities = 507/564 (89%), Gaps = 44/564 (7%)
Strand = Plus / Minus
Query: 8 ttcacaccagttagtggagattcacaccagcaagtggggattcacaccagcaagtgacag 67
||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ttcacaccagtaagtgaaggttcacaccagcaagtggggattcacaccagcaagtgacag 671
Query: 68 ttcacaccagcaagtggaggttcactcctgtaagtggacctg------------------ 109
|||||||||||||||||||||||| |||||||||||||||||
Sbjct: 670 ttcacaccagcaagtggaggttcattcctgtaagtggacctgttgaggttaatgcaaggt 611
Query: 110 -------------------ttggctacatagtgtctccagaccaaaaccaaagaaaatga 150
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 catcctcacatagccaaacttggctacatagtgtctccagaccaaaaccaaagaaaatga 551
Query: 151 accaaagttctaaccatcacagaggatgaaggagacagcatatagataaaatcccaaagg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 accaaagttctaaccatcacagaggatgaaggagacagcatatagataaaatcccaaagg 491
Query: 211 actgtgctcaaggagacatgataattatgaagaatagacataaagagtgtaagtcatagc 270
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 490 actgtgctcaaggagacatgataattatgaagaacagacataaagagtgtaagtcatagc 431
Query: 271 tgacaaaatttgagggtgggaacagataaatcatcagtggtggttagagtcccttttcca 330
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 430 tgacaaaatttgaaggtgggaacagataaatcatcaatggtggttagagtcccttttc-- 373
Query: 331 aaaaaaa-----atttattcgtgtttataacacctttaaatattccttctattacacggt 385
||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 372 aaaaaaatgtttatttatttgtgtttataacacctttaaatattctttctattacacggt 313
Query: 386 ctaaccaggctggccttgaactcacagagatcattctgtttctgcctcccaagtgctggc 445
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 312 ctaaccaggctggccttgaactcacagagatcatcctgtttctgcctcccaagtgctggc 253
Query: 446 actgaaggcacgtcatcatgccctgttatttttaatttttcataactatgtatgtatgtg 505
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
Sbjct: 252 actgaaggcacgtcatcatgccctgttatttttgatttttcataactatgtgtgtatgcg 193
Query: 506 tgtgtctgcctgtggttggtgtat 529
||||||||||||||||||||||||
Sbjct: 192 tgtgtctgcctgtggttggtgtat 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 932
Length adjustment: 10
Effective length of query: 519
Effective length of database: 922
Effective search space: 478518
Effective search space used: 478518
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_p06.g1 MSMg01no345_p06.g1 CHROMAT_FILE:
MSMg01no345_p06.g1 PHD_FILE: MSMg01no345_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:31 2005
(118 letters)
>mm_chr19_45069034_45069551
Length = 518
Score = 201 bits (104), Expect = 1e-56
Identities = 107/108 (99%)
Strand = Plus / Plus
Query: 11 ctgcctttttttctgtctcagggagctactcaaggaatgtctgtctcgccccacattcac 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ctgcctttttttctgtctcagggagctactcaaggaatgtctgtctcgccccacattcac 270
Query: 71 cccgcatgccagatgaattaaaatagatgagtctagaggcaggaagaa 118
|| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cctgcatgccagatgaattaaaatagatgagtctagaggcaggaagaa 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space: 56100
Effective search space used: 56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
