Query= MSMg01no346_f03.b1 MSMg01no346_f03.b1 CHROMAT_FILE:
MSMg01no346_f03.b1 PHD_FILE: MSMg01no346_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:59 2005
(226 letters)
>mm_chr19_10045204_10045833
Length = 630
Score = 400 bits (207), Expect = e-116
Identities = 218/223 (97%), Gaps = 4/223 (1%)
Strand = Plus / Plus
Query: 5 gaattccatgattttttaaaaagggatgggaatgttcagaggtggttagaatatcattca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgattttttaaaaagggatgggaatgttcagaggtggttagaatatcattca 264
Query: 65 ttcctctaaagctagagagataggtaaggaga-aacatgaaagatgtcctaaaatgcatc 123
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 265 ttcctctaaagctagagagataggtaaggaaagaacatgaaagatgtcctaaaatgcatc 324
Query: 124 ttgggtttgactcaggacaa---gactccgatcctaagttacaagcttcagacaagagat 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgggtttgactcaggacaacaagactccgatcctaagttacaagcttcagacaagagat 384
Query: 181 gggggtggagagaaggttgggattgggttcagggccctgcctg 223
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggggtggagagaaggttgggattgggttcagggccctgcctg 427
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 630
Length adjustment: 9
Effective length of query: 217
Effective length of database: 621
Effective search space: 134757
Effective search space used: 134757
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no346_f03.g1 MSMg01no346_f03.g1 CHROMAT_FILE:
MSMg01no346_f03.g1 PHD_FILE: MSMg01no346_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:59 2005
(467 letters)
>mm_chr19_10200877_10201743
Length = 867
Score = 888 bits (459), Expect = 0.0
Identities = 465/467 (99%)
Strand = Plus / Minus
Query: 1 acaccctcgtggttgcagtcaggctcattcaactcaggccaggggctgtgcctgcagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 acaccctcgtggttgcagtcaggctcattcaactcaggccaggggctgtgcctgcagaga 608
Query: 61 gggggactttggggctttttgagcatgaactatgattagcaggaagctgggaccaaatcc 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ggggcactttggggctttttgagcatgaactatgattagcaggaagctgggaccaaatcc 548
Query: 121 acaagaccttgtcacagcaagatacatgctgtggcaccaccacggccagcaaatcagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 acaagaccttgtcacagcaagatacatgctgtggcaccaccacggccagcaaatcagaat 488
Query: 181 ccaagtacagagggcacagaaatccccaagtaatcaggccaggtttgtgcttacaggagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ccaagtacagagggcacagaaatccccaagtaatcaggccaggtttgtgcttacaggagg 428
Query: 241 gctgaggcagagctaaggggttggagattcactacacattctgcagtctacttgaaatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gctgaggcagagctaaggggttggagattcactacacattctgcagtctacttgaaatgg 368
Query: 301 agcaagcctttttacaaccatacacattgttggaacgaggctgtcaacagttcaaaagcc 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agcaagcctttttacaaccacacacattgttggaacgaggctgtcaacagttcaaaagcc 308
Query: 361 tgtttggcttacccaatcagtctagtgggcaccaagaacagcctcctgtcttgctacaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgtttggcttacccaatcagtctagtgggcaccaagaacagcctcctgtcttgctacaag 248
Query: 421 ggcaacaggaggaagtggagagtcagagcagctcagtctcgcagtga 467
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ggcaacaggaggaagtggagagtcagagcagctcagtctcgcagtga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
