BAC Information

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BAC

Clone NameMSMg01-347F16
Chromosome19 (Build37)
Map Location 57,500,322 - 57,645,598
singlet/doubletdoublet
Overlap geneTrub1
Upstream geneCasp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540
Downstream geneLOC100043038, Atrnl1, Gfra1, LOC100043503, 1700011F14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347F16.T7 (MSMg01no347_f16.b1)MSMg01-347F16.TJ (MSMg01no347_f16.g1)
ACCAG459716AG459717
length784782
length of high quality
(start - end)		367 (69 - 435)465 (80 - 544)
definitionCHROMAT_FILE: MSMg01no347_f16.b1 PHD_FILE: MSMg01no347_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:18 2005CHROMAT_FILE: MSMg01no347_f16.g1 PHD_FILE: MSMg01no347_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,645,232 - 57,645,598)(57,500,322 - 57,500,786)
sequence
NNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGAAGTTAAACCTACTTGTCTCCTTTCATATCACTGGTCCT
GGCTTTACCCAGATCATCATATGGTCATCTCTTAGCAAGAAGGGCCTGAC
TCAGCGTGTCCCACTGACTTCTGTGCTTGGTTCTTTGAAGTAGTCTGTCT
TTATCCAACCTTAGCTACCGCCAGGCTATAAAAGTTCTGGTGAGAGAGAC
ATCCTGTGTTCAGCTCTGCTTATGACAGAGTGGTGACTCTGTCCTCTTGT
TTGGTCATGAAGAGCAGGAAGCCCGTTGGGGGCCACACAACAAAGCCATG
TTCTTCGGTGTCTCTGGAAGCTCTGCCCTCCTCCACGGAACTCCTGAAAG
AATCCCGATGGCTTCAGAACTCAGGGGTAAAGGAAAAGTGGTATTCCAGT
CCCAGTGTCTTACTAACTTTATAACTAGTATAAATATTCGTGAATGGTAC
TTGCTACTTTAAACAGTATATTTTCCCTATTTTGTCTTACTATGTGCTCT
GTTAGCTCTTATTACTGGTAACGTATTTGTCATTATTATTCCTTTTTACA
CTTCTCCGCCTTCTTTTTTTCCCTTTCCTTTCTCCCTCCCATTTCACTCC
CTTTCCTCTCTCCTTTTCTTTCATTTAATTTCCTTCTCCTTTATTTCTTT
CACCTCTCTACTCCTTCCTCATTTTCACCTCCTTTATTTCAACCTTTCCT
TCTCTTTTTTCCTTTTTTTTCTCCCATTCATTTG

NNCCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAATGGATCAAAGGGGAGAT
TAGGGAGTACTCAAAGTGCCCAAATGGCTCCTTGGGCGGCAAGAATGGAT
GTGCTAGATGAAATATACAAACACGTATCCACAGAATGGGACCGGGGGAT
TTCTTGTCAGACGTAAACCAACAGAGCCATATATGGCTGAGCAAGGGTGG
GGGCCCACCTGCCAGCCTTCTTAGGAGCTGCCACTGACACGATGCTTGTC
TGGGTGGGAAATATGCACGGCTCGTGTGAACAGGTACCTCCTGGAGGTCT
TGTGATCATTTTTTAAATATTGAAAACGTATAAGCAAGCACTGTGGCTAT
ACAATGGTGTGAGATAAACTGCACAAATCCATCACCTCTGGGAACCCTAG
AGGTGTCTGAGGCTGGTATAGAACAGATAACCCAATGGAACTGGTCAGCA
GTGATCGGTCATGGGTGATAGGTAGAGGTATTCTGATGATAGCTGTCATG
TGGTCAGTAATTACAGGAAGTAAAGACTTCTATACTTCTCACTACTACGG
GTTGAACTATTTTCCCTCCCAAAAGAATTATTGAAACCCTATATATCCCC
CTCAGCTGCAATCTCTCTTCCTGGCAAAACCTCTTTTCAAAAAAGGAAGC
GTGCCCCCCTTATATTTTTCCCCCACTTTGCTAATTGTGGGTCCCTTTAA
CACAATAAGTTCGGGTTGTTCTTCTACTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_f16.b1 MSMg01no347_f16.b1 CHROMAT_FILE:
MSMg01no347_f16.b1 PHD_FILE: MSMg01no347_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:18 2005
         (367 letters)



>mm_chr19_57645032_57645798
          Length = 767

 Score =  656 bits (339), Expect = 0.0
 Identities = 360/367 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctacttgtctcctttcatatcactggtcctggctttacccagatcatcatatggtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 567 acctacttgtctcctttcatatcactggtcctggctttacccagatcatcatatgatcat 508

                                                                       
Query: 61  ctcttagcaagaagggcctgactcagcgtgtcccactgacttctgtgcttggttctttga 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 507 ctcttagcaagaagggcctgactcagtgtgtcccactgacttctgtgcttggttctttga 448

                                                                       
Query: 121 agtagtctgtctttatccaaccttagctaccgccaggctataaaagttctggtgagagag 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 447 agtagtctgtctttatccaaccttagctaccgccaggctgtaaaagttctggtgagagag 388

                                                                       
Query: 181 acatcctgtgttcagctctgcttatgacagagtggtgactctgtcctcttgtttggtcat 240
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acattatgtgttcagctctgcttatgacagagtggtgactctgtcctcttgtttggtcat 328

                                                                       
Query: 241 gaagagcaggaagcccgttgggggccacacaacaaagccatgttcttcggtgtctctgga 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gaagagcaggaagcccattgggggccacacaacaaagccatgttcttcggtgtctctgga 268

                                                                       
Query: 301 agctctgccctcctccacggaactcctgaaagaatcccgatggcttcagaactcaggggt 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agctccgccctcctccacggaactcctgaaagaatcccgatggcttcagaactcaggggt 208

                  
Query: 361 aaaggaa 367
           |||||||
Sbjct: 207 aaaggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no347_f16.g1 MSMg01no347_f16.g1 CHROMAT_FILE:
MSMg01no347_f16.g1 PHD_FILE: MSMg01no347_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:18 2005
         (465 letters)



>mm_chr19_57500122_57500986
          Length = 865

 Score =  899 bits (465), Expect = 0.0
 Identities = 465/465 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaatggatcaaaggggagattagggagtactcaaagtgcccaaatggctccttgggcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaatggatcaaaggggagattagggagtactcaaagtgcccaaatggctccttgggcgg 260

                                                                       
Query: 61  caagaatggatgtgctagatgaaatatacaaacacgtatccacagaatgggaccggggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagaatggatgtgctagatgaaatatacaaacacgtatccacagaatgggaccggggga 320

                                                                       
Query: 121 tttcttgtcagacgtaaaccaacagagccatatatggctgagcaagggtgggggcccacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcttgtcagacgtaaaccaacagagccatatatggctgagcaagggtgggggcccacc 380

                                                                       
Query: 181 tgccagccttcttaggagctgccactgacacgatgcttgtctgggtgggaaatatgcacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccagccttcttaggagctgccactgacacgatgcttgtctgggtgggaaatatgcacg 440

                                                                       
Query: 241 gctcgtgtgaacaggtacctcctggaggtcttgtgatcattttttaaatattgaaaacgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcgtgtgaacaggtacctcctggaggtcttgtgatcattttttaaatattgaaaacgt 500

                                                                       
Query: 301 ataagcaagcactgtggctatacaatggtgtgagataaactgcacaaatccatcacctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataagcaagcactgtggctatacaatggtgtgagataaactgcacaaatccatcacctct 560

                                                                       
Query: 361 gggaaccctagaggtgtctgaggctggtatagaacagataacccaatggaactggtcagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggaaccctagaggtgtctgaggctggtatagaacagataacccaatggaactggtcagc 620

                                                        
Query: 421 agtgatcggtcatgggtgataggtagaggtattctgatgatagct 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgatcggtcatgggtgataggtagaggtattctgatgatagct 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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