Query= MSMg01no347_g06.b1 MSMg01no347_g06.b1 CHROMAT_FILE:
MSMg01no347_g06.b1 PHD_FILE: MSMg01no347_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:21 2005
(366 letters)
>mm_chr19_11886577_11887342
Length = 766
Score = 677 bits (350), Expect = 0.0
Identities = 359/362 (99%)
Strand = Plus / Plus
Query: 5 gaattcatcaatagcattaactcagttcacctactgaatggcttggaactcagctttcta 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcaacagcattaactcagttcacctactgaatggcttggaactcagctttcta 264
Query: 65 ccctccaatgggtaagacctgcaaactaatacaataataataatactatattagctatat 124
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 ccctccaatgggtaagacctgcaaactaatacaataataataatactatgttagctatat 324
Query: 125 ggctgtatttgtatcaacagaaaaaagaatctgtggagtcagggaatgcagggttaatgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggctgtatttgtatcaacagaaaaaagaatctgtggagtcagggaatgcagggttaatgg 384
Query: 185 atttagcctgggaagctttcccacggcgatgacaccagagcccagcatcaggggatgaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttagcctgggaagctttcccacggcgatgacaccagagcccagcatcaggggatgaga 444
Query: 245 aggattttaccagagagaaaatgaagtagctgggttttcacttaggtatccatatgttgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggattttaccagagagaaaatgaagtagctgggttttcacttaggtatccatatgttgt 504
Query: 305 ctgccattgtctttctgatcaaagacagcctctgtgacttcttgaactggattatttgtt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 ctgccattgtctttctgatcaaagacagcctctgtgacttcttgaactggattgtttgtt 564
Query: 365 tg 366
||
Sbjct: 565 tg 566
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_g06.g1 MSMg01no347_g06.g1 CHROMAT_FILE:
MSMg01no347_g06.g1 PHD_FILE: MSMg01no347_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:21 2005
(448 letters)
>mm_chr19_12063178_12064025
Length = 848
Score = 640 bits (331), Expect = 0.0
Identities = 383/419 (91%), Gaps = 32/419 (7%)
Strand = Plus / Minus
Query: 60 ctcatggtcagaagaaagtggttcagtaatgtatccggttcctgttctagttctctcctt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 ctcatggtcagaagaaagtggttcagtaatgtatccggttcctgttctagttctctcctt 789
Query: 120 taagtctactttttggatctgcgtactaaggacacatgactttctacctacc-------- 171
|||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 788 taagtctactttttggatctgcgtactaaggacacatgactttctacc--cctctctctc 731
Query: 172 -------c-ccccccctctctctctctccacacacacacacacacacacacacacacaca 223
| | | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tctctctctctctctctctctctctctccacacacacacacacacacacacacacacaca 671
Query: 224 cac--------------gcacattaaataaaaaaatttacatttcaacctctcttacctt 269
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cacacacgcgcgcgcatgcacattaaataaaaaaatttacatttcaacctctcttacctt 611
Query: 270 tcttgctacatcccgagagaagtagctataaggaacaaatttaagattacacttgtctcc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tcttgctacatcccgagagaagtagctataaggaacaaatttaagattacacttgtctcc 551
Query: 330 tgtcttgtgatttacaatgtcaatctcaccagactgtaaagtgacaagaatcatgggtta 389
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 550 tgtcttgtgatttacaatgtcaatctcaccagactgtaaagtgagaagaatcatgggtta 491
Query: 390 gttttatgaagactgacctgagttttacatgagcattccttttgtgtgtcacatgttgg 448
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gttttatgaagactgacctgagttttacatgagcattccttttgtgtgtcacatgttgg 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
