BAC Information

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BAC

Clone NameMSMg01-347G22
Chromosome19 (Build37)
Map Location 25,315,094 - 25,479,803
singlet/doubletdoublet
Overlap geneAnkrd15, LOC433233
Upstream geneFxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503
Downstream geneLOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347G22.T7 (MSMg01no347_g22.b1)MSMg01-347G22.TJ (MSMg01no347_g22.g1)
ACCAG459775AG459776
length803751
length of high quality
(start - end)		408 (49 - 456)433 (81 - 513)
definitionCHROMAT_FILE: MSMg01no347_g22.b1 PHD_FILE: MSMg01no347_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:24 2005CHROMAT_FILE: MSMg01no347_g22.g1 PHD_FILE: MSMg01no347_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,479,444 - 25,479,803)(25,315,094 - 25,315,526)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTTTTTTCTCCCATGCAGATGTGATGCTAGGGTCGATAGCT
GTCAACTTGGACTTGAGTTTACATGAGGAATGGAGGAACCTGTGGTGGAA
GGAATCTGGATCTCAAGCGGCTCTGAGGATGAAAGCTGATATTACAACTC
TTGAAGACAGCCAGGCAGTGGTGGCACATGCTTTTAGTCCCAGCACTTGG
GAGGCAGAGGCAGGCGGATTTCTGGGTTCTAGGCCAGCCTGGTCTACAGA
CTGAGTTCCACAGGGCTATACAAAGAAACCCTGTCTCCAAAAACCAAAAA
CCAAAACCAACCAAACAAAAACCCAAAACCACCACACATACATACACAAA
CACAAAAACCACAAAAACCCACAAACAAACAAACAAAAAATAAACTCTTG
AAGAGCCTAAAGAGTGACCTTGAGTTCTAAGAGATGCAGCAGTGTCTATC
CTGTGCTATCTTCTCACCGTTACCCCCACATTGCGGGGGGGGGGGGGGGC
CGTTTTGTCCCCCGCCCCTTTTCTTTTCTTTTTTTTCTTTCTCCTCTCTT
TCCCTTTGCTCTCTGTGCCTTTCTTTTTTTTCCCCCCCCCCTTTCCCTTT
TTTTTCCCTCCCTCCTTCCCTGCCCTTTTTTTTTTTCCCCCCTCTCCCTC
TTTTTTTTTCCCCCCTTCCCCTTTTCGTTCCCCCTTCCTCCTTCTCTCCC
CCCTCTCCCCCCCTTTCCCTCCCTTTTCTTCCCTCTTTTTCTTTTTTCTC
CCN

NNNCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGAAATTTCCCTTATGG
GAAAGCTTGTGAGTAAGGTGATAGCCTTTAACTTTGGTAAATAATAATTA
TATTTCTTTCTATGACATGCAGAGTTCTGGTGGAGGAACCCTGAGCTCCT
AGCAAGGAGAAGGAACTGAGGTACTGAGCCAGAATAGGAAGCAGGGGTCA
AACCTGCCTGCAGTAGGCCCCAGTGGCTCATTCTCAGAGGTAGTCACTGA
ACTAGGAGTAGGTAGCAGAGATCTGGGGGACAGGCAAGGGGTTGACTATA
TGTTGAGAACCAGAAACTCAAGTAGGCAAGGCCATAGAAGTTAGATACCA
GCATTGCTGGACATGGGATGTTTGAATGGCCGTTTGAGATCGCCCCCTTT
GTCCATAGACTTGTGACTATGAATACTGTTGTTCTGAGCCCAGATCCCCT
GATTGGAATGTAGGATCTGTAGCTTGCTCTGTGAGTTTTGGTGAGTTACT
GAACTGCTCTTTGCTTCCTTTGCCTGCTGGGAATGGTGTTAATAGTCGAG
TGGGGGCTTAATCTTAATCCCCAGACGGGGGATGTTGATTTGGCTGGGTT
CTGTTCAAGCCACCTGGGAAAAAACCTGGGCTCTTTAAGGCCAGTAAAAA
AATATAAATTTCTTTGTTGAAAAGAATAACCTTAGCTTTTTTACCCCCCC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_g22.b1 MSMg01no347_g22.b1 CHROMAT_FILE:
MSMg01no347_g22.b1 PHD_FILE: MSMg01no347_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:24 2005
         (408 letters)



>mm_chr19_25479444_25480251
          Length = 808

 Score =  681 bits (352), Expect = 0.0
 Identities = 358/360 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttttttctcccatgcagatgtgatgctagggtcgatagctgtcaacttggac 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gaattctttttttcctcccatgcagatgtgatgctagggtcgatagctgtcaacttggac 301

                                                                       
Query: 65  ttgagtttacatgaggaatggaggaacctgtggtggaaggaatctggatctcaagcggct 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 300 ttgagtttacatgaggaatggaggaacctgtggtggaaggaatctggatctcgagcggct 241

                                                                       
Query: 125 ctgaggatgaaagctgatattacaactcttgaagacagccaggcagtggtggcacatgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctgaggatgaaagctgatattacaactcttgaagacagccaggcagtggtggcacatgct 181

                                                                       
Query: 185 tttagtcccagcacttgggaggcagaggcaggcggatttctgggttctaggccagcctgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tttagtcccagcacttgggaggcagaggcaggcggatttctgggttctaggccagcctgg 121

                                                                       
Query: 245 tctacagactgagttccacagggctatacaaagaaaccctgtctccaaaaaccaaaaacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tctacagactgagttccacagggctatacaaagaaaccctgtctccaaaaaccaaaaacc 61

                                                                       
Query: 305 aaaaccaaccaaacaaaaacccaaaaccaccacacatacatacacaaacacaaaaaccac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  aaaaccaaccaaacaaaaacccaaaaccaccacacatacatacacaaacacaaaaaccac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no347_g22.g1 MSMg01no347_g22.g1 CHROMAT_FILE:
MSMg01no347_g22.g1 PHD_FILE: MSMg01no347_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:24 2005
         (433 letters)



>mm_chr19_25314894_25315726
          Length = 833

 Score =  822 bits (425), Expect = 0.0
 Identities = 431/433 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggaaatttcccttatgggaaagcttgtgagtaaggtgatagcctttaactttggtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggaaatttcccttatgggaaagcttgtgagtaaggtgatagcctttaactttggtaa 260

                                                                       
Query: 61  ataataattatatttctttctatgacatgcagagttctggtggaggaaccctgagctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataataattatatttctttctatgacatgcagagttctggtggaggaaccctgagctcct 320

                                                                       
Query: 121 agcaaggagaaggaactgaggtactgagccagaataggaagcaggggtcaaacctgcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaaggagaaggaactgaggtactgagccagaataggaagcaggggtcaaacctgcctg 380

                                                                       
Query: 181 cagtaggccccagtggctcattctcagaggtagtcactgaactaggagtaggtagcagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtaggccccagtggctcattctcagaggtagtcactgaactaggagtaggtagcagag 440

                                                                       
Query: 241 atctgggggacaggcaaggggttgactatatgttgagaaccagaaactcaagtaggcaag 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctggggtacaggcaaggggttgactatatgttgagaaccagaaactcaagtaggcaag 500

                                                                       
Query: 301 gccatagaagttagataccagcattgctggacatgggatgtttgaatggccgtttgagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccatagaagttagataccagcattgctggacatgggatgtttgaatggccgtttgagat 560

                                                                       
Query: 361 cgccccctttgtccatagacttgtgactatgaatactgttgttctgagcccagatcccct 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 cgccccctttgtccatagacttgtgactgtgaatactgttgttctgagcccagatcccct 620

                        
Query: 421 gattggaatgtag 433
           |||||||||||||
Sbjct: 621 gattggaatgtag 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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