Query= MSMg01no347_i06.b1 MSMg01no347_i06.b1 CHROMAT_FILE:
MSMg01no347_i06.b1 PHD_FILE: MSMg01no347_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:31 2005
(455 letters)
>mm_chr19_55394603_55395457
Length = 855
Score = 803 bits (415), Expect = 0.0
Identities = 446/465 (95%), Gaps = 14/465 (3%)
Strand = Plus / Minus
Query: 5 gaattctttctatttttaaccacaaagatgtgaataacgtatggacttcagtcaaatatg 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaattctttctagttttaaccacaaagatgtgaataacgtatggacttcagtcaaatatg 547
Query: 65 gactggtggcaaatgcatcaagacaaggtggtaacaaggtccactggcatgcggaaatga 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 546 gactggtggcaaatgcatcaagacaaggtggtaacaaggtccactgacatgcggaaatga 487
Query: 125 agagtcattttgtgattgttatacaatctcaattattctaaaagtaaaatgttttgggcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agagtcattttgtgattgttatacaatctcaattattctaaaagtaaaatgttttgggcc 427
Query: 185 aggagtatagctgactgagtgtgggtctaacaagagataaggccttgggtcctacgcctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 426 aggagtatagctgactgagtgtgggtctaacaagagataaggccttgggtcctacacctg 367
Query: 245 gctccacaaatacaaaatgaagccgttacttaaattaactataaactgtcctagtttata 304
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 366 gctccacaaatacaaagtgaagccattacttaaattaactataaactgtcctagtttata 307
Query: 305 gttaatttaaggacaagatccctctaggtttatagtgtagacaatgtgtagaagtgtaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gttaatttaaggacaagatccctctaggtttatagtgtagacaatgtgtagaagtgtaaa 247
Query: 365 aatgaaaatatgaatgtatatgtacacttgacacaaatttgt--------------gatg 410
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 246 aatgaaaatatgaatgtatatgtacacttgacacaaatttgtatttgttacccaaagatg 187
Query: 411 actaaaattccataaatagttgtttataaagcataactgaaccat 455
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 actaaaattccataaatagttgtttataaagcataactgaaccat 142
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_i06.g1 MSMg01no347_i06.g1 CHROMAT_FILE:
MSMg01no347_i06.g1 PHD_FILE: MSMg01no347_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:31 2005
(456 letters)
>mm_chr19_55217957_55218812
Length = 856
Score = 658 bits (340), Expect = 0.0
Identities = 360/374 (96%), Gaps = 12/374 (3%)
Strand = Plus / Plus
Query: 1 tattgagaaacaggcctttgattgtttaggtcaaaaggccagaggaaaacgttgacgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattgagaaacaggcctttgattgtttaggtcaaaaggccagaggaaaacgttgacgcct 260
Query: 61 cccattttcttcctaccagggcagtttctactaagaaactctaaacccccttaacattct 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 cccattttcttcctaccagggcagtgtctactaagaaactctaaacccccttaacattct 320
Query: 121 tcaggggattctcaagtccagggctcagaactatgcatagagagctatttgttcctgggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggggattctcaagtccagggctcagaactatgcatagagagctatttgttcctgggt 380
Query: 181 ggagaggcagctgggaaacggggctcactgtttcagcaaatatggctgcaggaaggggag 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagaggcagctggggaacggggctcactgtttcagcaaatatggctgcaggaaggggag 440
Query: 241 cgttcccatcagcctctcgccacagcgctgaaaggctgtccagc------------agga 288
|||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 cgttcccatcagcctctcgccacagcgctgaaaggctgtccagctggctgtccagcagga 500
Query: 289 agatacccttaggttttgctgggggtgataacctctgcgaaaatccaatagctatttcct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatacccttaggttttgctgggggtgataacctctgcgaaaatccaatagctatttcct 560
Query: 349 gatctctctctctc 362
||||||||||||||
Sbjct: 561 gatctctctctctc 574
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
