BAC Information

Click to search

BAC

Clone NameMSMg01-347L04
Chromosome19 (Build37)
Map Location 11,217,728 - 11,217,952
singlet/doubletsinglet
Overlap gene1700025F22Rik
Upstream geneLOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395
Downstream geneMs4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347L04.T7 (MSMg01no347_l04.b1)MSMg01-347L04.TJ (MSMg01no347_l04.g1)
ACCAG459976AG459977
length767803
length of high quality
(start - end)
225 (123 - 347)---
definitionCHROMAT_FILE: MSMg01no347_l04.b1 PHD_FILE: MSMg01no347_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:45 2005CHROMAT_FILE: MSMg01no347_l04.g1 PHD_FILE: MSMg01no347_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTCATATCCTTCATTGGTTGTCTTTCTATAACGAAAACC
TTTTCAAATGAATAAAAGAAATGACATCAATGAACACCACATGACAATTT
ACATTAAGATGGTTTGTTCTTTGAGATAAGTTTCAGAATCTAGTGATTTG
AATTAACGTACTCGGTTTCTAGCTTTATTAACTTGAAAGAAAATGTTGCG
AATATGGACAAGGAAATTAAATATAAAGAATATTCTTCTTGGGCTGGAGA
AATGGCTCAGTGGTTGGAGGACTGACTGCTCTTCTGGAGGTTCTGGGTTC
GGGTCCTGACAACCACATGGAGGCTTCCAATCATCTGTACTGAGATCTGA
TGCCCTCTTCTGGAGTATCTGAGGACAGCTACAAGTGGACTTATATATAA
CAAATAAATAAATCTTTTTTTACAAGAATATTCTTTTCACTAGGGACATT
AAATGATAAATCACCTCTCTAGCATGTTAAGCGGATAAAGCGTAATTGTT
TATTAATGCTATACTGTATGCATTGTCTGTTCTATGTAACCTGATCAGCA
TGCGTGTCTGGAATATGTTCTCTCCTCAACTTTTACTCCAATTCCCCTCC
GGTCTTCTCCCATATTATTCATCCTTCGGCCTTCTTGCCTGTTATTCACC
TTCTCATTACCCACTCCTTCTTTCTCCTTTCCCTTTCTTTTTACACTTCC
TTTTTCCCATTCTTTTN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGAGTTCTAGTACAGCCAGGACTGCAC
AGAGAAACCCTGTTTCGAAAACAAACCAACAAACAAACAAACAAAGCAAA
CAAACAAACACCAAACCAAAACAGACAAAAACAACAGCAAAAACCCAACT
TCCCTCAACAAAACAAAACAAAAGAAAACAAAAAAACCCAACTCCAACCA
AAACAAACTGAAAAAAAAAGTCAGATATCTGAGGAAGATGGAGTCCGGAG
AGAGGTCTCCCAGGGCATTGGGCTTCGCTGAGGTTGTGGGCAGAGTTTGG
TGAGTCGTGTTGGAACATATGAGCTTAGATCATGTTGGGGAGGTGAGGGG
TGATCCTTGTCTAACGAAGACCTGAGTAGCATAAATTTGCCTAGCCGAAC
ATGGAATAGGAATTGGAAGATGCTTTACTGAATAACGGGACCTGAATTTG
CCACTTTTCTTAACAGACGGAAACCATGTGGAAGCCAGTGTAAGAGAACC
TGGGACCTTCCTAGGTTAATGTGAGGACCTCGGAGGGTTTAGTCTTGAAC
TGTATGGACTGAAATACATGGCCACCTTTTTTCTAGCCCAAGTCTCGGCT
TTACTGGTTTTTGTTCTAATTACCCCCTGTATATTGCCACAAATATTTTT
TTTGAACTTTTTCAACTCGCATAAAAATTTTTTATATTTCGTTTGTTTCT
ACACTTTTGTTTTTCTTTTCTCCTTTTCCACTCTCCTTTTTTTTGTTCGT
TCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_l04.b1 MSMg01no347_l04.b1 CHROMAT_FILE:
MSMg01no347_l04.b1 PHD_FILE: MSMg01no347_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:45 2005
         (225 letters)



>mm_chr19_11217585_11218209
          Length = 625

 Score =  420 bits (217), Expect = e-122
 Identities = 223/225 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacatcaatgaacaccacatgacaatttacattaagatggtttgttctttgagataagtt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 368 gacatcaatgaacaccacatgacaatttacattgagatggtttgttctttgagataagtt 309

                                                                       
Query: 61  tcagaatctagtgatttgaattaacgtactcggtttctagctttattaacttgaaagaaa 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 308 tcagaatctagtgatttgaattaacgtactcgttttctagctttattaacttgaaagaaa 249

                                                                       
Query: 121 atgttgcgaatatggacaaggaaattaaatataaagaatattcttcttgggctggagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atgttgcgaatatggacaaggaaattaaatataaagaatattcttcttgggctggagaaa 189

                                                        
Query: 181 tggctcagtggttggaggactgactgctcttctggaggttctggg 225
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tggctcagtggttggaggactgactgctcttctggaggttctggg 144


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)