Query= MSMg01no349_f05.b1 MSMg01no349_f05.b1 CHROMAT_FILE:
MSMg01no349_f05.b1 PHD_FILE: MSMg01no349_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:54 2005
(466 letters)
>mm_chr19_27131148_27132013
Length = 866
Score = 764 bits (395), Expect = 0.0
Identities = 439/473 (92%), Gaps = 32/473 (6%)
Strand = Plus / Plus
Query: 4 ggaattcttgtcttctaagttgactaccaagccaattc----------tgttttgttttg 53
||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 216 ggaattcttgtcttctaagttgaataccaagccaattctgttttgttttgttttgttttg 275
Query: 54 ttttgttttgttttgttttgttttgttttgttttgtttcagggcaaagacataaaagaag 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttttgttttgttttgttttgttttgttttgttttgtttcagggcaaagacataaaagaag 335
Query: 114 acaggtgggcaactgacacaaaaaattatttgctgtaaacccttgacatgtgtggtgata 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 acaggtgggcaactgacacaaaaaattatttgctgtaaacccttgacatgtgtggtgata 395
Query: 174 ctatacattatacacacacacacacacacacacacacatatatatatatatacatatata 233
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 396 ctatacattatacacacacac--------------------atatatatatacatatata 435
Query: 234 tacacatacatatatataacatataattatataattctatacttattttataatgcacac 293
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 t--acatacatatatataacatataattatataattctatacttattttataatgcacac 493
Query: 294 aagtctactcaagtatactatattccttctcataggctcatttacctaaaatagtgttgc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aagtctactcaagtatactatattccttctcataggctcatttacctaaaatagtgttgc 553
Query: 354 caaagaaagttgtagtatagtaaaaaggaaaaaacaacaacactaaaataaagatgacca 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 caaagaaagttgtagtatagtaaaaaggaaaaaacaacaacactaaaataaagatgacca 613
Query: 414 ttatttttaaaagtcattataaggaaggcagcgcagaacataagctgggcatg 466
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 614 ttatttttaaaagtcattataaggaaggcagtgcagaacataagctgggcatg 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_f05.g1 MSMg01no349_f05.g1 CHROMAT_FILE:
MSMg01no349_f05.g1 PHD_FILE: MSMg01no349_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:54 2005
(508 letters)
>mm_chr19_27326693_27327600
Length = 908
Score = 936 bits (484), Expect = 0.0
Identities = 502/508 (98%)
Strand = Plus / Minus
Query: 1 ctatcatctccatcctacagagatgcttagtaatttgctctctctaggacccctgggaca 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 708 ctatcatctccatcctacagagatgcttagtaatttgccctctctaggacccctgggaca 649
Query: 61 gagaagcatgtgttatcgacaattcgtagagctctaaacacacacccagctgcccatctg 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gagaagcatgtgttattgacaattcgtagagctctaaacacacacccagctgcccatctg 589
Query: 121 actttgctcccaagcacagtcaaaaagaaagccatccttgaaatatcccagagttactac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 actttgctcccaagcacagtcaaaaagaaagccatccttgaaatatcccagagttactac 529
Query: 181 cgagcccagactccccacactcttcctgtctcacacttgtcccagggtcaacacatacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 528 cgagcccagactccccacactcttcctgtctcacacttgtcccagggtcaacacagacac 469
Query: 241 acaacagggaaacttaaatggattctaagtctgtggccccacttcattcctgtgtcttgg 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 468 acaacagggaaacttaaatggattctaaatctgtggccccacttcattcctgtgtcttgg 409
Query: 301 aggaaccaggctcagaaacacaaacagattgaagtgacactgtaaagagatgggacctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aggaaccaggctcagaaacacaaacagattgaagtgacactgtaaagagatgggacctct 349
Query: 361 gatcacaaccctcaacttaggagtccctagtccttagggcaaaagacttacaattggctc 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 348 gatcacaaccctcaacttaggagtccctagtccttagggcaaaagaattacaattggctc 289
Query: 421 tccatcggtaaaggtcgatgggaatgagattcctacaaacatgattattatccttcccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tccatcggtaaaggtcgatgggaatgagattcctacaaacatgattattatccttcccag 229
Query: 481 gaagctcttgtgagctggagacctccgt 508
||||||||||||| ||||||||||||||
Sbjct: 228 gaagctcttgtgaactggagacctccgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
