Query= MSMg01no349_j17.b1 MSMg01no349_j17.b1 CHROMAT_FILE:
MSMg01no349_j17.b1 PHD_FILE: MSMg01no349_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:16 2005
(547 letters)
>mm_chr19_48661032_48661979
Length = 948
Score = 866 bits (448), Expect = 0.0
Identities = 496/536 (92%), Gaps = 38/536 (7%)
Strand = Plus / Minus
Query: 13 aattc-aaaacttttcacatctttgacaagcctctgatttctagacctggagaggatagt 71
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 aattcaaaaacttttcacatctttgacaagcctctgatttctggacctggagaggatagt 442
Query: 72 tgtgctctatttggaaacacaaatgctttcaacttaggtcattcaggggctcccagaacc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgctctatttggaaacacaaatgctttcaacttaggtcattcaggggctcccagaacc 382
Query: 132 actttggagaacaggcatagaaggcatagaagaagagtcctgagtagtgaagtccaccaa 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actttggagaacaggcatagaaggcatagaagaagagtcctgagtagtgaagtccaccaa 322
Query: 192 tacactaagtgccacataaatggccctttgcccaaagaacggccagtattgggagatcca 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacactaagtgccacataaatggccctttgcccaaagaacggccagtattgggagatcca 262
Query: 252 ggactcacagattctccttccacctgcagagtgccactctgaatacatctgtttttgttt 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggactcacagattctccttccacctgcagagtgccactctgaatacatctgtttttgttt 202
Query: 312 gtttgttttttgttttgttttgttttgttttgttttgttttgttttgttttgttttaaca 371
||||||||| ||||||||||||||
Sbjct: 201 gtttgtttt-------------------------------------gttttgttttaaca 179
Query: 372 atgaaaccaagaagctattctgttcaagagatgccagcaaagctaaaagctaaaagccat 431
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 178 atgaaaccaagaagctattctgttcaagagatgccaacaaagctaaaagctaaaagccat 119
Query: 432 tccgcaagggaatcaccccacaaacaaagcacacattcctccaaggtttgagcaaggaaa 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tccgcaagggaatcaccccacaaacaaagcacacattcctccaaggtttgagcaaggaaa 59
Query: 492 acaaatagccctcttgaggaatatcacctgtgaaggggagacacttcttccctgtg 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acaaatagccctcttgaggaatatcacctgtgaaggggagacacttcttccctgtg 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 948
Length adjustment: 10
Effective length of query: 537
Effective length of database: 938
Effective search space: 503706
Effective search space used: 503706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_j17.g1 MSMg01no349_j17.g1 CHROMAT_FILE:
MSMg01no349_j17.g1 PHD_FILE: MSMg01no349_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:16 2005
(513 letters)
>mm_chr19_48587157_48588066
Length = 910
Score = 961 bits (497), Expect = 0.0
Identities = 508/513 (99%), Gaps = 3/513 (0%)
Strand = Plus / Plus
Query: 1 agatgtggatgcatgaagcaagatgaaggaaactggctcaaggacctgtggagccagcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgtggatgcatgaagcaagatgaaggaaactggctcaaggacctgtggagccagcgt 260
Query: 61 ctgacaccacatggccactcaagttggcatgaaaatgataaagacaaagaaccttgtagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgacaccacatggccactcaagttggcatgaaaatgataaagacaaagaaccttgtagg 320
Query: 121 tgattttagaaaatggtcaaggctgttggaatgggagtactcatcaggaattgcttctat 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tgattttagaaaatggtcaaggctgttgggatgggagtactcatcaggaattgcttctat 380
Query: 181 tgagaactgagctgtcaaatggatctgtttgcttgacgtcattgtcaggaagccaggtac 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tgagaactgagctgtcaaatggatctgtttgcttgacgtcattgtcagga---caggtac 437
Query: 241 tgaagacacagatagaggcttgccccacgtgggaagcatgaggctaggtgtgcatagcag 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 438 tgaagacacagatagaggcttgccccacgtgggaagcatgaggctcggtgtgcatagcag 497
Query: 301 cttccttttctttggtccatgcatgcctagtggctctaggagaagcgagtctaagagaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cttccttttctttggtccatgcatgcctagtggctctaggagaagcgagtctaagagaga 557
Query: 361 gagagcctcttccagaggaagatctttgagaaagtgaatgaattaacattagatttgcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gagagcctcttccagaggaagatctttgagaaagtgaatgaattaacattagatttgcct 617
Query: 421 tttcttagaggttatcaagcagatcagcatattctaagcccagcgtgtcctccattacca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tttcttagaggttatcaagcagatcagcatattctaagcccagcgtgtcctccattacca 677
Query: 481 cagtattgattatacacagtggaatgactaggg 513
|||||||||||||||||||||||||||||||||
Sbjct: 678 cagtattgattatacacagtggaatgactaggg 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 910
Length adjustment: 10
Effective length of query: 503
Effective length of database: 900
Effective search space: 452700
Effective search space used: 452700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
