XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAGACCAACCAA
ACAACAACAACAACAACAACAAATGAACCAAACACATAGGAAAATGGATT
TAATCAGTCACTGACAAAAGTGAATCATAATAATAATAATAAGTGACACA
ACCAAATTGGTAAAGATGCCAAGAAATTAAAATTCTCATATACTATTCAG
GGAATACAACATCTGTTAACTTTGTCATACCTATTAAAGCAGAGCAACTG
TATAAGCTCCGCCTTGATAGTCCCCTCTATGAAGAGACCTACCAATACCT
GTTCACATCTCCACTGAAACTTGTCAAAATTTCCCTGTCAGCATTATTTC
CCCTGGAAGTAAAATAACCCAAATTCCAATCGATAATAAAATGGATCTTT
TTGATAAAACTATGCAGTAAATACTTTACTGTTATAATAATGCATTTTTA
GACTAAATAAATATTTATAACATTTACCAAAAAATAATGTTGAGTTTCAA
AAGAAACATACACAACAGTCAGGCTATGGGAATATTATTTATACCATGTT
CAAAGCCAGGCAAAAGTTATCAATGGTAACAGATCCAGGGGAGTTGGTTC
TCTGAGGGAAAGGGTCAAGGCTAGAGAAGACTTTCAAAACATAGTGTGAT
ATCATTGCACATATATTATGGCGATTATAN

CAATGGATTGTCGGTTTTCGATCGTGGAGGAGCTGTTCTGTGTGCTGTTA
TATATTTTATGGGCTNACATCTACCAGTAGACGGATCGCGACGAGAAGGT
GATATGCGCCATTGAGCACGTACAGTGGTAGCCGATAGTGAGTAAAATAT
CTATGAATGCAATTGTAGCTCTTCTAGGTCATTTTTATTGACGTTTGATT
ACTAGCATGGCGGTTGCGTTAGCGTATCCCGTACTTGGGAGCACCTCGCC
AGTAGGAATGCATAACGGATGGGATATTTTGTATCCATAAACATGCTACA
TCCGGTGCTGTTATGTACGGGAATTAATTCTACGGACGAAGAATAGCGAC
GCTACTGGTTGGTATTGCCAGATATCCCATGTCATTGCAGCTGCATTCAC
TTCGCTCCGCCGCTATTGCTGTCGTCGGAAATAATCGCCTCTATCTCTAG
CGGTTACTCATTCATAATATTTATCCCCTCCATGGTTAGCGTGTCAGGTT
AGCGAGGTCCCGGCATCCCATGTTGAGTTTCGATTCGCGTGCTAGTTCCC
GTCATCGTATCGTCCCTCCCCTTATCTTTGTATAGCTTCGTGCCCTGCCG
TCCCTTATTCTTTACTCTCTTATGACTTCGTTGTCAACAGTAATACCGTG
TAGTGTTCGCCCCGTCGCGCGGACTATTGTCCGCGCCACCGGTATGTTAT
ATACGCGAGAATATACATAATTTGTCTGTAATCATGACTACGTACTTCAC
GCGCATGTAATCTCTTATGCTGCTTGTACGTATACACTTGTTAGTAGCAG
CTCTGCCGCACTCGATGATGTAGGTTTGTCGTTATCACTGATTATCACAT
GTCCCACCTCCACTGACGTTCTCCCGATTCGTATGGAATTGGCTTACGCA
AGAATAAGGGCATTATTTCTCAGACTGTTATTTTACCATTTCTCTTACTG
TTCATACAATATGAGTAAACGTGCGTATATTCTGATGATGTCGTTAATCG
CCTATTTGAGTATTATCGCGCATCNCTCTTCTAATCTTTTCAGCACTCCT
CCGCTACGTTTCCTTATTGTTCTTTTACCGCGCAGAGCCCATTCGCTCTC
GTCTCCTTTCNCGTACCGCTGTGTGGTGGTATAAAGGGTCGCGTAGCGTG
ATACTAGCGTACGACGGAATTTTGCGATATCAAG

Query= MSMg01no349_p09.b1 MSMg01no349_p09.b1 CHROMAT_FILE:
MSMg01no349_p09.b1 PHD_FILE: MSMg01no349_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:44 2005
         (600 letters)



>mm_chr19_26227573_26228572
          Length = 1000

 Score = 1075 bits (556), Expect = 0.0
 Identities = 582/596 (97%), Gaps = 9/596 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggacagccagggctacacagagaaaccctgtctcaaaagaccaaccaaacaa 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 640 gaattccaggacagccagggctacacagagaaaccctgtctcaaaagaccaacca----- 586

                                                                       
Query: 65  caacaacaacaacaacaaatgaaccaaacacataggaaaatggatttaatcagtcactga 124
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ----aacaacaacaacaaatgaaccaaacacataggaaaatggatttaatcagtcactga 530

                                                                       
Query: 125 caaaagtgaatcataataataataataagtgacacaaccaaattggtaaagatgccaaga 184
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 529 caaaagtgaatcataataataataataagtaacacaaccaaattggtaaagatgccaaga 470

                                                                       
Query: 185 aattaaaattctcatatactattcagggaatacaacatctgttaactttgtcatacctat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aattaaaattctcatatactattcagggaatacaacatctgttaactttgtcatacctat 410

                                                                       
Query: 245 taaagcagagcaactgtataagctccgccttgatagtcccctctatgaagagacctacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 taaagcagagcaactgtataagctccgccttgatagtcccctctatgaagagacctacca 350

                                                                       
Query: 305 atacctgttcacatctccactgaaacttgtcaaaatttccctgtcagcattatttcccct 364
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 349 atacctgttcacatctccaccgaaacttgtcaaaatttccctgtcagcattattttccct 290

                                                                       
Query: 365 ggaagtaaaataacccaaattccaatcgataataaaatggatctttttgataaaactatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ggaagtaaaataacccaaattccaatcgataataaaatggatctttttgataaaactatg 230

                                                                       
Query: 425 cagtaaatactttactgttataataatgcatttttagactaaataaatatttataacatt 484
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cagtaaataccttactgttataataatgcatttttagactaaataaatatttataacatt 170

                                                                       
Query: 485 taccaaaaaataatgttgagtttcaaaagaaacatacacaacagtcaggctatgggaata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 taccaaaaaataatgttgagtttcaaaagaaacatacacaacagtcaggctatgggaata 110

                                                                   
Query: 545 ttatttataccatgttcaaagccaggcaaaagttatcaatggtaacagatccaggg 600
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 109 ttatttataccatgttcaaagccaggcaaaagttatcaatggcaacagatccaggg 54


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)