BAC Information

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BAC

Clone NameMSMg01-351I10
Chromosome19 (Build37)
Map Location 51,607,862 - 51,608,221
singlet/doubletsinglet
Overlap genenone
Upstream geneSorcs1
Downstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936, Ins1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351I10.T7 (MSMg01no351_i10.b1)MSMg01-351I10.TJ (MSMg01no351_i10.g1)
ACCAG462875AG462876
length744752
length of high quality
(start - end)		518 (55 - 572)473 (84 - 556)
definitionCHROMAT_FILE: MSMg01no351_i10.b1 PHD_FILE: MSMg01no351_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:47 2005CHROMAT_FILE: MSMg01no351_i10.g1 PHD_FILE: MSMg01no351_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATTTTAGAAAAGATTCATACTATTAATATACTTTCT
CTGCTATTGTTAAACATATATAACAGTCACTAGGTATTAGCCCAACCCTT
TTTGAGCAGATCTCTGCAGATCTATGAAGATGTAATGTTTTTAGTCATGC
TATACAGCCAAATAGATGACTTCTTAAGTCTTAATGATGATCCTATATGG
ATCCCTAATATTATATCAGTGATTATTAAGCTATTTTATAGTGGGACTGC
TATTAGGTCCTTCTTCGATAATCAAAACTGCAATGAGAACCTCACTCTTA
GTCCAGTGGTTGTCTGTGAGCATCCACCTTTGTATTTGCAAGGCTCTGGC
AGGGCCTCTCAGGAGACAGCTATATCAGGCCCCTTTGAGAAAGCATTTCT
TAGCATCCACAATAGTGTCAGAGTTTGGTGACTGTATTTGGGATGAATTC
CCAGATGGGACAGTCTTTGGATGGCCTTTACTTCAGTCTCTGCTCTGCAT
TTTCTATCCCTATTTGCTCCTGTGAGTATTTTGTTCCCCTTTCTAAGAAG
GACCAAAGCACCCACACTTTGGTCTTCCTTCTTCTTGAGGCTCATGTGGN
CTGTGAATTGGATCTTGTANAAATGGAAAGAAAGATGAAGATCTGCAATA
AAACTGCTTCCTGGACAAATGAACACGATCTTCCCTGGAGTACC

NNNNTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGAATGCTTAGGGTG
AAGGAGAGAAGAGACAGGTTTAGGTAAGTCTTAACTCAGACACGATACCA
TTTGGTAGGGCAGAACCACGAGGAGGATTAGAGTGTCTTTTGTGGGGCGA
TCAGGAACTAGTTTTATGGCCGGCCATATATGCCTGTGACCTTTGATTAC
CGTTTTTCTATGATTTAAGCATGGGTCCCTAATCTCCTTTCTTCAAGGAT
AGGTGCCAGCTACACCTGATTATCTAAGAGTGCTCTGGCCTTGGCGTCAT
TGAAGCTGTGGAGTTTTTGTCATTTGTCTTATTTGGATTGATACCGGCAG
CTCCTTGCGTCCTCCTGGGGAAGCTAGGGAGGTGGAATGACCGCCCCCCC
CCAGCCCCCAGCGTTTGCTGCAATGGGGAGGGGGAGCAGGGCTTCTGAGG
GGCAATGTGGAGGTATAAGGCAGAAGCAAGCCTTATTGAGCTTCTCAGGG
AAAGTGCAGAGGCAAGCCACAGAAGCAAGTCTTACTGTGCTCGCTGTGGG
AAAAAAAAATTCCTAGGGGAAAGGGGGACTTCTGCAAAGAGGGACAAAGC
AAGCGGTCTGGTGACCTCAGTTCCTGTTATAAGGGTGTATAAAGGTTAAC
CCCTTAGATGTCTACCCTAGTTATCCCATTGGGTCCTTATAAGGAAGTGG
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_i10.g1 MSMg01no351_i10.g1 CHROMAT_FILE:
MSMg01no351_i10.g1 PHD_FILE: MSMg01no351_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:47 2005
         (473 letters)



>mm_chr19_51607545_51608421
          Length = 877

 Score =  572 bits (296), Expect = e-167
 Identities = 343/360 (95%), Gaps = 4/360 (1%)
 Strand = Plus / Plus

                                                                       
Query: 118 tcaggaactagttttatggccggccatatatgcctgtgacctttgattaccgtttttcta 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 318 tcaggaactagttttatggccggccatatatgcctgtgacctttgattaccgttttacta 377

                                                                       
Query: 178 tgatttaagcatgggtccctaatctcctttcttcaaggataggtgccagctacacctgat 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgatttaagcatgggtccctaatctcctttcttcaaggataggtgccagctacacctgat 437

                                                                       
Query: 238 tatctaagagtgctctggccttggcgtcattgaagctgtggagttttt---gtcatttgt 294
           ||||||||||||||||||||||||||||||||||| || |||||||||   |||||||||
Sbjct: 438 tatctaagagtgctctggccttggcgtcattgaagttgaggagttttttttgtcatttgt 497

                                                                       
Query: 295 cttatttggattgataccggcagctccttgcgtcctcctggggaagctagggaggtggaa 354
           |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 498 cttatttggattgataccggcagctccttgtgtcctcctggggaggctagggaggtggaa 557

                                                                       
Query: 355 tgaccgcccccccccagcccccagcgtttgctgcaat-ggggagggggagcagggcttct 413
           ||||||||||||| |||| |||||||||||||||||  ||||||| ||||||||||||||
Sbjct: 558 tgaccgcccccccacagcacccagcgtttgctgcaagaggggaggaggagcagggcttct 617

                                                                       
Query: 414 gaggggcaatgtggaggtataaggcagaagcaagccttattgagcttctcagggaaagtg 473
           ||||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaggggcaacgcggaggcaaaaggcagaagcaagccttattgagcttctcagggaaagtg 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 877
Length adjustment: 10
Effective length of query: 463
Effective length of database: 867
Effective search space:   401421
Effective search space used:   401421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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